Owner
ccmbioinfo
17 indexed repositories · View on GitHub
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crg2
Research pipeline for exploring clinically relevant genomic variants
Python · 17 stars
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Python · 8 stars
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Python · 7 stars
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stager
Share genomic and exomic datasets and request analyses. Deployed for Care4Rare.
TypeScript · 7 stars
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osmp
One-Sided Matching Portal
TypeScript · 6 stars
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ccm_benchmate
A knowledge aggregator for computational biology
Python · 6 stars
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Perl · 2 stars
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osmp-cmh-token-proxy
A NodeJS proxy for swapping Authorization headers in OSMP requests to CMH's PhenoTips instance.
TypeScript · 2 stars
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report-scripts
Scripts to transform and POST pipeline reports
Python · 1 star
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ccm_runpal
Simple container tool for running jobs locally and in slurm through python.
Python · 1 star
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CPHI-DRAGEN-anno
DRAGEN VCF annotation and CSV report generation
Python · 1 star
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JavaScript · 0 stars
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ccm_benchmate_docs
Documentation for ccm_benchmate package
Ruby · 0 stars
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Python · 0 stars
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cv_db
CV parser and database to facilitate collaboration
Python · 0 stars
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status
📈 Uptime monitor and status page for Centre for Computational Medicine at SickKids, powered by @upptime
Markdown · 0 stars
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Python · 0 stars
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Docs: Clean up old documentation and create new documentation related to the variant upload script Open
ccmbioinfo/report-scripts#6 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/MetaFusion#4 · 2 comments · 0 reactions · 0 assignees ·
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CFF file format Openbug documentation
ccmbioinfo/MetaFusion#6 · 5 comments · 0 reactions · 1 assignee ·
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ccmbioinfo/MetaFusion#12 · 7 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/MetaFusion#14 · 1 comment · 0 reactions · 0 assignees ·
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ccmbioinfo/MetaFusion#15 · 1 comment · 0 reactions · 0 assignees ·
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ccmbioinfo/MetaFusion-Clinical#2 · 2 comments · 0 reactions · 0 assignees ·
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Blocklist Open
ccmbioinfo/MetaFusion-Clinical#3 · 2 comments · 0 reactions · 0 assignees ·
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backend backlog
ccmbioinfo/stager#220 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/stager#754 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/stager#891 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/stager#905 · 1 comment · 0 reactions · 0 assignees ·
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ccmbioinfo/stager#950 · 2 comments · 0 reactions · 1 assignee ·
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ccmbioinfo/stager#990 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/stager#1021 · 0 comments · 0 reactions · 1 assignee ·
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making it available Open
ccmbioinfo/ccm_benchmate_docs#1 · 0 comments · 0 reactions · 0 assignees ·
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devops
ccmbioinfo/stager#1054 · 0 comments · 0 reactions · 1 assignee ·
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frontend
ccmbioinfo/stager#1079 · 1 comment · 0 reactions · 0 assignees ·
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frontend
ccmbioinfo/stager#1101 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/osmp-cmh-token-proxy#2 · 0 comments · 0 reactions · 0 assignees ·
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Migrate to MUI 5.0 Openfrontend
ccmbioinfo/stager#1114 · 0 comments · 0 reactions · 0 assignees ·
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Migrate to React 18 Openfrontend
ccmbioinfo/stager#1115 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/ccm_runpal#1 · 0 comments · 0 reactions · 1 assignee ·
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backend bug frontend
ccmbioinfo/stager#1158 · 1 comment · 0 reactions · 0 assignees ·
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ccmbioinfo/osmp#180 · 1 comment · 0 reactions · 0 assignees ·
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CHEO-RI space
ccmbioinfo/crg2#27 · 3 comments · 0 reactions · 1 assignee ·
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ccmbioinfo/osmp#290 · 1 comment · 0 reactions · 1 assignee ·
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Create slurm profile OpenCHEO-RI space
ccmbioinfo/crg2#35 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/osmp#309 · 1 comment · 0 reactions · 0 assignees ·
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update README Open
ccmbioinfo/crg2#63 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/osmp#429 · 0 comments · 0 reactions · 0 assignees ·
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update schema Open
ccmbioinfo/crg2#66 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/osmp#430 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/osmp#431 · 0 comments · 0 reactions · 0 assignees ·
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CHEO-RI space
ccmbioinfo/crg2#69 · 0 comments · 0 reactions · 1 assignee ·
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ccmbioinfo/osmp#432 · 0 comments · 0 reactions · 0 assignees ·
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2021-10 release
ccmbioinfo/crg2#86 · 1 comment · 0 reactions · 1 assignee ·
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ccmbioinfo/osmp#433 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/crg2#103 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/mugqic_pipelines#13 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/crg2#105 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/crg2#112 · 1 comment · 0 reactions · 0 assignees ·
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ccmbioinfo/crg2#118 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/crg2#125 · 0 comments · 0 reactions · 0 assignees ·
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usability
ccmbioinfo/hcc-calculator#5 · 0 comments · 0 reactions · 1 assignee ·
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ccmbioinfo/crg2#133 · 0 comments · 0 reactions · 0 assignees ·
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ccmbioinfo/crg2#150 · 0 comments · 0 reactions · 0 assignees ·
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MT for hg38 Open
ccmbioinfo/crg2#182 · 0 comments · 0 reactions · 1 assignee ·
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gnomAD update Open
ccmbioinfo/crg2#183 · 0 comments · 0 reactions · 2 assignees ·
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STRs for hg38 Open
ccmbioinfo/crg2#187 · 0 comments · 0 reactions · 0 assignees ·