ccmbioinfo / ccmbioinfo/MetaFusion

cis-sage clustering with blocklist fusions

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#14 1 comment 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
8
Forks
2
PR merge metrics
No merged PRs in 30d

Description

We noticed that in the main metafusion script, that blocklist fusions are not filtered prior to cis-sage clustering. i'm wondering if this is possibly a bug.

Contributor guide

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Research direction

Start by locating the main MetaFusion metafusion script and trace how blocklist fusions are handled relative to cis-sage clustering. Determine whether blocklist fusions reach clustering before filtering and identify the expected behavior from the surrounding workflow. Done means the filtering order is verified and the bug report is either confirmed with a reproducible case or shown not to apply.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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