ccmbioinfo / ccmbioinfo/MetaFusion

Use MetaFusion for hg38 based RNA reads

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Dominant language
Python
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Description

Hi,

I am trying to create reference files for MetaFusion to run on my fusion calling output on hg38 based RNA reads.
Can you provide me information about how the "new_bed.total.Oct-1-2020.uniq.bed" and "hgTables.gene_symbol.ENSG.ENST.ENSP.Nov-13-2020.tsv" files were made? Which regions are included here? Did you use a GTF file to create these references?

Thanks a lot.

Chih-Fan

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by locating the referenced new_bed.total.Oct-1-2020.uniq.bed and hgTables.gene_symbol.ENSG.ENST.ENSP.Nov-13-2020.tsv files and reviewing any available generation notes. Document how each reference was made, which regions it includes, and whether a GTF file was used.

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Assessment

Domain
bioinformatics, documentation
Issue type
Documentation
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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