ccmbioinfo / ccmbioinfo/MetaFusion
Use MetaFusion for hg38 based RNA reads
- Dominant language
- Python
- Stars
- 8
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
Hi,
I am trying to create reference files for MetaFusion to run on my fusion calling output on hg38 based RNA reads.
Can you provide me information about how the "new_bed.total.Oct-1-2020.uniq.bed" and "hgTables.gene_symbol.ENSG.ENST.ENSP.Nov-13-2020.tsv" files were made? Which regions are included here? Did you use a GTF file to create these references?
Thanks a lot.
Chih-Fan
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by locating the referenced new_bed.total.Oct-1-2020.uniq.bed and hgTables.gene_symbol.ENSG.ENST.ENSP.Nov-13-2020.tsv files and reviewing any available generation notes. Document how each reference was made, which regions it includes, and whether a GTF file was used.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, documentation
- Issue type
- Documentation
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100