ccmbioinfo / ccmbioinfo/MetaFusion-Clinical

Metafusion.clinical.sh not accounting for options in file naming.

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Perl
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Description

There are a few times within the Metafusion.clinical.sh script where if an option isnt specified, the name of the file is still updated and results in an empty file and failure for the rest of the run

1. https://github.com/ccmbioinfo/MetaFusion-Clinical/blob/f29363c812f59e436aa4f5a62d0292b31d263b6b/scripts/MetaFusion.clinical.sh#L162
2. https://github.com/ccmbioinfo/MetaFusion-Clinical/blob/f29363c812f59e436aa4f5a62d0292b31d263b6b/scripts/MetaFusion.clinical.sh#L169
3. https://github.com/ccmbioinfo/MetaFusion-Clinical/blob/f29363c812f59e436aa4f5a62d0292b31d263b6b/scripts/MetaFusion.clinical.sh#L181
4. etc etc...

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