biocore/emp

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Code repository of the Earth Microbiome Project.

Stars: 169
Forks: 68
Open beginner issues: 0
Indexed issues: 30

Dominant language: Jupyter Notebook
License: BSD-3-Clause
Last GitHub push: Dec 13, 2022
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Open All

30 open issues indexed

Inventory of samples pledged, received, processed, and released (including examples of projects) Open

biocore/emp#6 · 6 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
animated PCoA of the specific timeseries we have within the context of full PCoA plot Open

analysis

biocore/emp#7 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
search for additional support for rare taxa across environments Open

analysis

biocore/emp#11 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
comparing spatial and temporal scales Open

question

biocore/emp#12 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
are there any shared OTUs between all ecosystems surveyed Open

analysis

biocore/emp#14 · 13 comments · 0 reactions · 3 assignees · Indexed Sep 14, 2026
Identify good examples of studies to compare driving factors Open

analysis

biocore/emp#16 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Guide to evaluating studies/metadata in the database Open

biocore/emp#18 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
100 most wanted list Open

analysis

biocore/emp#23 · 31 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
taxonomy assignment on all 'new OTUs' Open

analysis

biocore/emp#26 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
alignment and OTU tree Open

analysis

biocore/emp#27 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
abundance figure Open

analysis

biocore/emp#31 · 6 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
global modeling Open

analysis

biocore/emp#38 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
blooming taxa analysis Open

analysis

biocore/emp#39 · 15 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
driving factors of interest Open

analysis

biocore/emp#40 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
similarity between biomes or sample types Open

analysis

biocore/emp#44 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
primer effects before/after introduction of new primers Open

analysis

biocore/emp#45 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
website: Defining the Tasks Open

biocore/emp#48 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Sequences dropped by split libraries Open

biocore/emp#59 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
random forests classifier Open

biocore/emp#61 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
add QIIME2 initial processing instructions to the EMP website Open

biocore/emp#84 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Question: fastaq for release 1 Open

biocore/emp#102 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Platinum Hot Start versus Q5 Hot Start Hifi PCR kits Open

biocore/emp#104 · 2 comments · 1 reaction · 0 assignees · Indexed Sep 14, 2026
buying or printing trading cards Open

biocore/emp#109 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
taxons with empo habitats Open

biocore/emp#110 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Searching for one specific genus of interest using 16S rRNA data Open

biocore/emp#114 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
18s data availability? Open

biocore/emp#115 · 8 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
What kind of data was used in deblur? Open

biocore/emp#122 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Broken links on website and no "www." redirect Open

biocore/emp#124 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
16 EMP - Adaptor timming Open

biocore/emp#130 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Availability of data for the multi-omics analyses on the EMP500 Open

biocore/emp#133 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026

biocore/emp

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