Availability of data for the multi-omics analyses on the EMP500
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Description
Dear EMP community,
I was wondering if the microbially-related metabolite feature table and Normalized microbe feature table were available for download (I am referring to the tables that were used to analyse differential metabolite-microbe co-occurrences as described in Extended Data Fig 1 of the Nature Microbiology paper). Recreating those tables from raw data seems possibles thanks to your extensive documentation but it would be time consuming.
Best
Simon
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Research direction
The issue names the microbially-related metabolite feature table and Normalized microbe feature table used for differential metabolite-microbe co-occurrences in Extended Data Fig 1. Check the repository’s existing documentation and raw-data workflow first; done would mean confirming whether those tables are downloadable or documenting where they can be obtained.
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Assessment
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100