biocore / biocore/emp

Availability of data for the multi-omics analyses on the EMP500

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Description

Dear EMP community,
I was wondering if the microbially-related metabolite feature table and Normalized microbe feature table were available for download (I am referring to the tables that were used to analyse differential metabolite-microbe co-occurrences as described in Extended Data Fig 1 of the Nature Microbiology paper). Recreating those tables from raw data seems possibles thanks to your extensive documentation but it would be time consuming.
Best
Simon

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Research direction

The issue names the microbially-related metabolite feature table and Normalized microbe feature table used for differential metabolite-microbe co-occurrences in Extended Data Fig 1. Check the repository’s existing documentation and raw-data workflow first; done would mean confirming whether those tables are downloadable or documenting where they can be obtained.

Written by the indexing model from the issue text.

Assessment

Domain
data
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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