biocore / biocore/emp

Question: fastaq for release 1

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#102 3 comments 0 reactions 0 assignees View on GitHub
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Description

Hi,
Thanks for putting all the code and data analysis for the emp release 1. It's great!
I wanted to ask a question, I am very interested in performing a smaller study looking at the data but using a different pipeline for the microbial community analysis. I was able to get fastaq files for all the studies, but the data is only available in single reads in ENA. I was wondering if there any studies with pair-end sequences fastaq?

Thanks

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Research direction

No repository file, test, or code entry point is identified. Review the Earth Microbiome Project release 1 data references and the ENA availability mentioned in the issue; done would be a clear answer about whether any studies provide paired-end FASTQ sequences.

Written by the indexing model from the issue text.

Assessment

Domain
data
Issue type
Documentation
Difficulty
1/5
Estimated time
Under an hour
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
15/100

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