biocore/LabControl

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lab manager for plate maps and sequence flows

Stars: 2
Forks: 15
Open beginner issues: 0
Indexed issues: 123

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Sep 12, 2019
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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123 open issues indexed

gDNA page blocks the webserver without UI indication Open

bug priority:high

Difficulty 4/5 3-5 days Newbie friendliness 30/100

biocore/LabControl#473 · 1 comment · Opened Apr 22, 2019
Are transactions rolled back during failure? Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

biocore/LabControl#472 · 13 comments · Opened Apr 22, 2019
Duplicate name testing is not asserted on prepare shotgun libraries Open

bug priority:high

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#470 · 2 comments · Opened Apr 22, 2019
Capture max_vol_per_well from GUI and store in DB somewhere Open

scope:large

Difficulty 5/5 Over a week Newbie friendliness 32/100

biocore/LabControl#454 · 1 comment · Opened Apr 15, 2019
Remove duplication of plate creation date info in db Open

code refactor

Difficulty 5/5 Over a week Newbie friendliness 25/100

biocore/LabControl#449 · Opened Apr 11, 2019
Manually advance combo index dialog Open

feature request priority:low scope:large

Difficulty 5/5 Over a week Newbie friendliness 25/100

biocore/LabControl#447 · 4 comments · Opened Apr 10, 2019
Modify generate_prep_information to correctly create prep sheets for sequencing runs based on library plate pools Open

bug priority:medium scope:medium

biocore/LabControl#444 · 2 comments · 1 assignee · Opened Apr 9, 2019
Support mini 16S protocol in Labcontrol Open

priority:high scope:large

Difficulty 5/5 Over a week Newbie friendliness 10/100

biocore/LabControl#443 · 2 comments · Opened Apr 9, 2019
Plate external_ids (names) should not be left blank. Open

priority:medium

Difficulty 4/5 3-5 days Newbie friendliness 42/100

biocore/LabControl#441 · Opened Apr 9, 2019
Test LC plating across multiple studies Open

priority:medium

biocore/LabControl#437 · 4 comments · 2 assignees · Opened Apr 5, 2019
Pull-down menu in Prepare Sequencing Runs page should only list PIs Open

priority:low

biocore/LabControl#435 · 1 assignee · Opened Apr 5, 2019
Instrument_model is a standard vocabulary in EBI Open

priority:high question scope:small

biocore/LabControl#430 · 17 comments · 1 assignee · Opened Apr 3, 2019
Add target to Plate.list_plates Open

priority:high

Difficulty 3/5 1-2 days Newbie friendliness 20/100

biocore/LabControl#419 · 3 comments · Opened Apr 2, 2019
Echo Pick List cannot be (re)downloaded Open

priority:high

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#417 · Opened Apr 1, 2019
Move labman.primer_set 18S and ITS inserts from db_patch_manual.sql into the populate_prod_db.sql Open

bug priority:low

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

biocore/LabControl#416 · 8 comments · Opened Apr 1, 2019
Changes in Qiita Dev should trigger Labcontrol integration test Open

priority:low

biocore/LabControl#408 · 2 comments · 2 assignees · Opened Mar 27, 2019
Labcontrol is creating extra plates Open

bug priority:high

Difficulty 4/5 3-5 days Newbie friendliness 25/100

biocore/LabControl#406 · 4 comments · Opened Mar 27, 2019
Silent 500 errors when plating samples Open

priority:high

biocore/LabControl#405 · 2 comments · 1 assignee · Opened Mar 26, 2019
Comb codebase for sql queries incorrectly linking specialized composition ids to generic composition ids Open

code refactor priority:low scope:small

Difficulty 4/5 3-5 days Newbie friendliness 25/100

biocore/LabControl#391 · Opened Nov 14, 2018
Add new `was_pooled` field to amplicon prep file for blanks Open

feature request scope:medium

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#387 · 2 comments · Opened Nov 13, 2018
Refactor BaseDownloadHandler.deliver_zip to take in uncompressed content and compress it Open

code refactor scope:small

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#380 · Opened Nov 7, 2018
Limit i5/i7 primer plate selection in shotgun library prep to relevant working primer plates Open

enhancement priority:medium scope:small

biocore/LabControl#372 · 2 comments · 1 assignee · Opened Oct 9, 2018
Allow re-adding of previously deleted contact when preparing sequencing run Open

bug priority:low scope:small

Difficulty 2/5 1-3 hours Newbie friendliness 58/100

biocore/LabControl#371 · Opened Oct 9, 2018
Require run names to be unique or display create time Open

feature request priority:high scope:small

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#365 · 3 comments · Opened Oct 4, 2018
Allow viewing of pooling settings for an existing pool made from "Pool library plates" OR "Prepare amplicon sequencing pool" Open

feature request priority:high scope:large

biocore/LabControl#362 · 4 comments · 1 assignee · Opened Oct 4, 2018
Prevent silent timeout failure when computing pool values on "Pool library plates" page Open

bug priority:high scope:unknown

biocore/LabControl#361 · 5 comments · 1 assignee · Opened Oct 4, 2018
Configuration manager defaults point to non-existent folder Open

bug priority:high scope:small

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

biocore/LabControl#347 · Opened Aug 30, 2018
Change labman.well table to store row_num and col_num as zero-based Open

code refactor scope:medium

Difficulty 5/5 Over a week Newbie friendliness 35/100

biocore/LabControl#345 · Opened Aug 28, 2018
Warn if number of physical samples doesn't match number of samples with metadata Open

feature request priority:low scope:large

Difficulty 4/5 3-5 days Newbie friendliness 25/100

biocore/LabControl#344 · 1 comment · Opened Aug 28, 2018
Warn user if prep info file contains duplicate samples Open

feature request priority:medium scope:medium

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#343 · Opened Aug 28, 2018
Support generating prep info files for non-Illumina sequencing runs Open

feature request scope:large

Difficulty 5/5 Over a week Newbie friendliness 20/100

biocore/LabControl#342 · 2 comments · Opened Aug 27, 2018
Determine correct volume for wells in new gDNA compression plate Open

code refactor priority:medium scope:small

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#341 · Opened Aug 27, 2018
Improve GUI display of unexpected errors Open

enhancement priority:low scope:medium

Difficulty 4/5 3-5 days Newbie friendliness 32/100

biocore/LabControl#338 · 2 comments · Opened Aug 22, 2018
Capture sequencing run prep information and insert into prep file Open

feature request scope:large

Difficulty 5/5 Over a week Newbie friendliness 25/100

biocore/LabControl#333 · 1 comment · Opened Aug 22, 2018
Extend Preparation Info file to have an Ext_robot_EP column and an Ext_robot_KF column instead of a single Extraction_robot column Open

feature request priority:high scope:small

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

biocore/LabControl#324 · Opened Aug 16, 2018
Fix "reformat" option in Normalize gDNA Plates Open

bug priority:high scope:small

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#323 · 3 comments · Opened Aug 16, 2018
Improve labeling, activation for well comments in Plate Samples Open

enhancement feature request front-end priority:high scope:small

Difficulty 3/5 1-2 days Newbie friendliness 45/100

biocore/LabControl#314 · Opened Aug 2, 2018
Allow lab to pick which lane a pool goes into on Prepare Sequencing Run page Open

feature request priority:high scope:small

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#313 · 1 comment · Opened Aug 1, 2018
Clarify in interface how to re-view existing quantitations Open

enhancement front-end priority:medium scope:small

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#312 · 3 comments · Opened Aug 1, 2018
Relabel and provide convention guidance for "Run Name" and "Run Experiment" on Prepare Sequencing Run page Open

enhancement front-end priority:medium scope:small

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

biocore/LabControl#311 · 1 comment · Opened Aug 1, 2018
Remove or otherwise deprecate "destination tube" field on Pool Library Plates page Open

feature request priority:high scope:small

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#310 · 1 comment · Opened Aug 1, 2018
Clarify labeling of volume field on Prepare Shotgun Libraries page Open

enhancement front-end priority:high scope:small

biocore/LabControl#308 · 2 comments · 1 assignee · Opened Aug 1, 2018
Reposition or clarify location of Download buttons in interface Open

enhancement front-end priority:medium scope:small

Difficulty 3/5 1-2 days Newbie friendliness 35/100

biocore/LabControl#306 · Opened Aug 1, 2018
Explicitly indicate which plates go in which quadrant during gDNA compression Open

feature request front-end priority:high scope:medium

Difficulty 2/5 1-3 hours Newbie friendliness 30/100

biocore/LabControl#305 · Opened Aug 1, 2018
Clarify meaning or change iconography for red "remove plate" Xs in interface Open

enhancement front-end priority:medium scope:small

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#304 · Opened Aug 1, 2018
Clarify save status of sample plating in interface Open

enhancement front-end priority:low scope:small

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

biocore/LabControl#302 · 2 comments · Opened Aug 1, 2018
Add labeling on PicoGreen Quantification page indicating expected format for files to be uploaded Open

enhancement front-end priority:medium scope:small

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

biocore/LabControl#298 · 4 comments · Opened Aug 1, 2018
Allow filtering by plate type in all plate selection steps Open

feature request priority:high scope:medium

Difficulty 4/5 3-5 days Newbie friendliness 35/100

biocore/LabControl#297 · Opened Aug 1, 2018
Update labeling on Prepare Amplicon Sequencing Pool page Open

enhancement front-end priority:medium scope:small

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

biocore/LabControl#294 · Opened Aug 1, 2018
Determine how wet lab models inputs for amplicon pool library plates and decide on interface changes to address Open

enhancement front-end scope:medium scope:small

Difficulty 5/5 Over a week Newbie friendliness 20/100

biocore/LabControl#293 · 1 comment · Opened Aug 1, 2018

biocore/LabControl

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