OpenFreeEnergy / OpenFreeEnergy/ExampleNotebooks
remove fetch command
Open
Nobody has claimed this yet.
1.0docdrive
- Dominant language
- Jupyter Notebook
- Stars
- 70
- Forks
- 15
- Avg merge
- 10h 42m
- Merged PRs (30d)
- 2
Description
In the showcase notebook there's a mda.fetch_mmtf command, but fetching from rcsb can sometimes be problematic with firewalls. Better to download and include the mmtf locally in the repo.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Open the showcase notebook and find the mda.fetch_mmtf command. Inspect how the notebook currently obtains its RCSB input, add the MMTF file locally as requested, and update the notebook to use it. Run the notebook to confirm it works without fetching from RCSB.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook
- Domain
- content, documentation
- Issue type
- Refactor
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100