Owner

MrGiovanni

11 indexed repositories · View on GitHub

UNetPlusPlus
[IEEE TMI Best Paper Award] Official Implementation for UNet++

Python · 2684 stars
ModelsGenesis
[MICCAI 2019 Young Scientist Award] [MedIA Best Paper Award] Models Genesis: self-supervised pre-training for 3D medical images. Learns t...

Jupyter Notebook · 791 stars
SuPreM
[ICLR 2024 oral; top 1.2%] Supervised Pre-Trained 3D Models for Medical Image Analysis (9,262 CT volumes + 25 annotated classes)

Python · 432 stars
SyntheticTumors
[CVPR 2023] Label-Free Liver Tumor Segmentation

Python · 378 stars
AbdomenAtlas
[NeurIPS 2023] AbdomenAtlas 1.0 (5,195 CT volumes + 9 annotated classes)

Python · 308 stars
DiffTumor
[CVPR 2024] Generalizable Tumor Synthesis - Realistic Synthetic Tumors in Liver, Pancreas, and Kidney

Python · 219 stars
RadGPT
[ICCV 2025] AbdomenAtlas 3.0 (9,262 CT volumes + medical reports). These “superhuman” reports are more accurate, detailed, standardized, ...

Python · 219 stars
PanTS
[NeurIPS 2025] PanTS: The Pancreatic Tumor Segmentation Dataset. PanTS is a vision-language dataset, which enables development and extern...

Shell · 125 stars
TextoMorph
[IEEE TMI] Tumor synthesis leveraging medical reports.

Python · 50 stars
SMILE

Python · 46 stars
SimSID
[IEEE TPAMI 2024] SimSID: unsupervised anomaly detection in chest radiography. SimSID learns the recurrent anatomical patterns of normal ...

Python · 25 stars

Beginner friendly Everything

Open All

Regarding training code Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

MrGiovanni/RadGPT#9 · Opened Sep 10, 2026
Question regarding CTVerse early access Open

Difficulty 1/5 Under an hour Newbie friendliness 25/100

MrGiovanni/SMILE#2 · Opened Aug 13, 2026
Is there a mapping between PanTS and AbdomenAtlas? Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

MrGiovanni/PanTS#15 · Opened Aug 4, 2026
Discrepancy in Loss Scheduling between Paper and train.sh Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

MrGiovanni/SMILE#1 · Opened Jun 23, 2026
Possible annotation artefacts in some of the `pancreatic_lesion.nii.gz` files Open

MrGiovanni/PanTS#12 · 3 comments · 1 reaction · 1 assignee · Opened Apr 20, 2026
non-contrast Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

MrGiovanni/RadGPT#8 · 1 comment · Opened Feb 18, 2026
release more checkpoints Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

MrGiovanni/PanTS#10 · 1 comment · Opened Jan 14, 2026
Wishlist for PanTS 🎅🏻 Open

documentation

MrGiovanni/PanTS#8 · 2 comments · 2 assignees · Opened Dec 17, 2025
Problem of liver tumor segmentation Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MrGiovanni/DiffTumor#24 · Opened Oct 29, 2025
Possible modality mislabeling in metadata (non-contrast scans appear enhanced) Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

MrGiovanni/PanTS#5 · 4 comments · Opened Oct 24, 2025
Deduplication Question Open

Difficulty 1/5 Under an hour Newbie friendliness 20/100

MrGiovanni/AbdomenAtlas#13 · Opened Oct 6, 2025
Potential inconsistencies and annotation issues Open

MrGiovanni/PanTS#4 · 2 comments · 1 assignee · Opened Sep 29, 2025
Can it used for generate tumor for healthy brain MRI ? Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

MrGiovanni/DiffTumor#23 · Opened May 22, 2025
checkpoints of fold1 Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MrGiovanni/TextoMorph#5 · Opened May 7, 2025
ValueError: Input contains NaN, infinity or a value too large for dtype('float32'). Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

MrGiovanni/SimSID#2 · Opened Apr 10, 2025
About NSD metric Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

MrGiovanni/DiffTumor#22 · Opened Mar 20, 2025
Fine-tune Open

Difficulty 1/5 Under an hour Newbie friendliness 30/100

MrGiovanni/SuPreM#21 · Opened Mar 8, 2025
Request for Pre-trained Weights Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

MrGiovanni/UNetPlusPlus#96 · Opened Jan 14, 2025
number of of annotated real tumors for training Diffusion Model Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

MrGiovanni/DiffTumor#21 · Opened Jan 13, 2025
An issue when using "direct_inference" on external private data. Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

MrGiovanni/SuPreM#20 · Opened Jan 13, 2025
About val_pseudo_lbl Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

MrGiovanni/DiffTumor#20 · Opened Dec 14, 2024
Why is the training mode is set to True in ContBatchNorm3d? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MrGiovanni/SuPreM#19 · Opened Dec 9, 2024
How is fine-grained tumor classification in the paper performed? Open

Difficulty 1/5 Under an hour Newbie friendliness 25/100

MrGiovanni/SuPreM#18 · Opened Nov 11, 2024
Segmentation Classes Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

MrGiovanni/SuPreM#17 · Opened Oct 31, 2024
About KiTS Dataset Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

MrGiovanni/DiffTumor#19 · 1 comment · Opened Oct 29, 2024
about the pretrained vqgan Open

Difficulty 4/5 3-5 days Newbie friendliness 32/100

MrGiovanni/DiffTumor#18 · 1 comment · Opened Oct 26, 2024
Visualization Guidance in Synthesizing Dataset from Trained LDM Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MrGiovanni/DiffTumor#16 · 2 comments · Opened Sep 24, 2024
bug on validation.py Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MrGiovanni/SyntheticTumors#16 · 1 reaction · Opened Aug 25, 2024
about step1 vqgan Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

MrGiovanni/DiffTumor#15 · 1 comment · Opened Aug 23, 2024
About the code of SwinUNETR v2 Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

MrGiovanni/SyntheticTumors#14 · Opened Aug 7, 2024
Spacing in file header Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

MrGiovanni/DiffTumor#14 · Opened Jul 23, 2024
Problem with Singularity Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MrGiovanni/DiffTumor#11 · 1 comment · Opened Jul 11, 2024
Aout pre-trained SimSID models Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

MrGiovanni/SimSID#1 · Opened Jul 2, 2024
Could I understand the TumorGenerated.py is a trick of data augmention? Open

Difficulty 1/5 Under an hour Newbie friendliness 15/100

MrGiovanni/SyntheticTumors#12 · 7 comments · Opened Jun 27, 2024
Program killed unexpectedly Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MrGiovanni/DiffTumor#10 · 1 comment · Opened Jun 20, 2024
Random select location for tumors Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

MrGiovanni/DiffTumor#9 · 3 comments · Opened Jun 19, 2024
25 Annotations Availability Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

MrGiovanni/SuPreM#12 · 1 reaction · Opened May 28, 2024
question of inference for abdomenatlas data Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

MrGiovanni/SuPreM#11 · 3 comments · Opened May 14, 2024
9,262 CT volumes Pre-trained model release Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

MrGiovanni/SuPreM#9 · 1 comment · Opened May 7, 2024
Update competition readme Open

Difficulty 1/5 Under an hour Newbie friendliness 65/100

MrGiovanni/ModelsGenesis#62 · Opened Mar 12, 2024
Help Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

MrGiovanni/UNetPlusPlus#95 · 1 comment · Opened Mar 11, 2024
How do I train U-Net++ on my custom 3D data? Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

MrGiovanni/UNetPlusPlus#94 · Opened Feb 5, 2024
Welcome to share the paper and code related to 3D medical pre-training Open

documentation

MrGiovanni/SuPreM#2 · 5 comments · 1 assignee · Opened Dec 11, 2023
Welcome to suggest more medical segmentation backbones Open

documentation

MrGiovanni/SuPreM#1 · 3 comments · 1 assignee · Opened Dec 11, 2023
Are we loading the whole dataset in the memory? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MrGiovanni/ModelsGenesis#61 · Opened Dec 1, 2023
Columns and DataType Not Explicitly Set on line 18 of load_utils.py Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MrGiovanni/ModelsGenesis#60 · Opened Nov 21, 2023
Code for tumor location selection Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

MrGiovanni/SyntheticTumors#6 · 3 comments · Opened Oct 18, 2023
Welcome to share the paper and code related to tumor synthesis Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

MrGiovanni/SyntheticTumors#1 · 7 comments · Opened Apr 23, 2023
About setting threshold values Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

MrGiovanni/ModelsGenesis#59 · 2 comments · Opened Mar 24, 2023
Question: segmentation_model_evaluation() Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

MrGiovanni/ModelsGenesis#58 · Opened Jan 30, 2023

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