Implement `to_ccdef()` function to output WFDB data to CCDEF/HDF5 Critical Care Data Format
Nobody has claimed this yet.
Assessment
- Difficulty
- 5/5
- Estimated time
- Over a week
- Newbie friendliness
- 25/100
- Issue type
- Feature
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- python
- Domain
- data-engineering
Research direction
Start by reviewing the WFDB package's record-loading entry points and the CCDEF specification at ccdef.org, with the CHoRUS project's need for both formats in mind. Define the scope and expected behavior of a to_ccdef() conversion before implementation; done means WFDB data can be output in a valid CCDEF/HDF5 format.
Written by the indexing model from the issue text.
Description
This needs more thought/discussion, but I wanted to make a note before I forget. If possible it would be helpful if we could introduce a function that would allow WFDB data to be easily outputted to the CCDEF/HDF5 Critical Care Data Format.
The general suggestion is that we could load a record using the WFDB package and then output to CCDEF with a to_ccdef() method.
The function would be useful for the CHoRUS project (https://chorus4ai.org/) which requires data in both WFDB and CCDEF formats. For more information on the CCDEF format, see: https://ccdef.org/.
- Dominant language
- Jupyter Notebook
- Stars
- 853
- Forks
- 322
- PR merge metrics
- No merged PRs in 30d
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
More from MIT-LCP/wfdb-python
-
Difficulty 4/5 3-5 days Newbie friendliness 45/100
MIT-LCP/wfdb-python#568 ·
-
Difficulty 3/5 1-2 days Newbie friendliness 48/100
MIT-LCP/wfdb-python#557 ·
-
Difficulty 2/5 1-3 hours Newbie friendliness 58/100
MIT-LCP/wfdb-python#554 ·
-
WFDB path ignored Open
Difficulty 4/5 3-5 days Newbie friendliness 35/100
MIT-LCP/wfdb-python#545 ·
-
Difficulty 5/5 Over a week Newbie friendliness 30/100
MIT-LCP/wfdb-python#540 ·
All issues in MIT-LCP/wfdb-python
Similar issues
-
bug
Difficulty 2/5 1-3 hours Newbie friendliness 88/100
-
Difficulty 2/5 1-3 hours Newbie friendliness 76/100
-
Schema-level dtype cannot be serialized: to_yaml raises RepresenterError, to_json raises TypeError Open
Difficulty 2/5 1-3 hours Newbie friendliness 76/100
unionai-oss/pandera#2511 ·
-
Difficulty 2/5 1-3 hours Newbie friendliness 74/100
unitaryfoundation/qldpc-challenge#1651 ·
-
Difficulty 1/5 Under an hour Newbie friendliness 90/100
statsmodels/statsmodels#10271 ·