Owner
Bioconductor
84 indexed repositories · View on GitHub
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Contributions
Contribute Packages to Bioconductor
149 stars
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BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
R · 137 stars
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bioconductor_docker
Docker Containers for Bioconductor
Dockerfile · 92 stars
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GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
R · 91 stars
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BiocManager
CRAN Package For Managing Bioconductor Packages
R · 76 stars
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Biostrings
Efficient manipulation of biological strings
R · 70 stars
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BiocParallel
Bioconductor facilities for parallel evaluation
R · 69 stars
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bioconductor-training
Bioconductor teaching and education committee
HTML · 59 stars
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GenomicRanges
Representation and manipulation of genomic intervals
R · 47 stars
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bioconductor.org
Source code for the Bioconductor website
HTML · 41 stars
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SummarizedExperiment
A container (S4 class) for matrix-like assays
R · 39 stars
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GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
R · 36 stars
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VariantAnnotation
Annotation of Genetic Variants
R · 32 stars
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Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
R · 31 stars
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DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasets
R · 29 stars
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GenomicFeatures
Query the gene models of a given organism/assembly
R · 26 stars
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IRanges
Foundation of integer range manipulation in Bioconductor
R · 24 stars
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BuildABiocWorkshop
Template for building a bioconductor workshop package using github actions
Dockerfile · 23 stars
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AnnotationHub
Client for the Bioconductor AnnotationHub web resource
R · 20 stars
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S4Vectors
Foundation of vector-like and list-like containers in Bioconductor
R · 18 stars
- 64 more repositories live on View on GitHub
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enviPathR OpenBuild Error Build OK Build Warning policies-accepted pre-review precheck-passed
Difficulty 1/5 Under an hour Newbie friendliness 84/100
Bioconductor/BiocContributions#207 · 6 comments ·
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loopQTL OpenBuild OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#206 · 6 comments · 1 assignee ·
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panpathAudit OpenBuild OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#204 · 8 comments · 1 assignee ·
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CascadeR OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#203 · 6 comments · 1 assignee ·
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
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paweh OpenBuild OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#202 · 7 comments · 1 assignee ·
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crossarrayEWAS OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#201 · 8 comments · 1 assignee ·
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exposomeSC OpenBuild Error Build Note Build OK policies-accepted pre-review precheck-passed
Difficulty 1/5 Under an hour Newbie friendliness 75/100
Bioconductor/BiocContributions#200 · 6 comments ·
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WithinHostExperiment OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#199 · 10 comments · 1 assignee ·
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MsBackendParquet OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#198 · 12 comments · 1 assignee ·
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tewas OpenBuild Note Build OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#196 · 8 comments · 1 assignee ·
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Difficulty 4/5 3-5 days Newbie friendliness 57/100
Bioconductor/BSgenome#85 ·
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scProkaR OpenBuild OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#195 · 6 comments · 1 assignee ·
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MsExperimentStash to store mass spectrometry result objects in portable and interoperable formats OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#194 · 6 comments · 1 assignee ·
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CDEnrich OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#193 · 7 comments · 1 assignee ·
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consensusRegions OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#192 · 6 comments · 1 assignee ·
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
Bioconductor/BBS#476 ·
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mgcca OpenBuild Error Build OK Build Unknown Build Warning policies-accepted pre-review precheck-passed
Difficulty 1/5 Under an hour Newbie friendliness 55/100
Bioconductor/BiocContributions#191 · 7 comments ·
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GenomicDataStream OpenBuild Note Build OK Build Unknown policies-accepted pre-review precheck-passed
Difficulty 3/5 1-2 days Newbie friendliness 45/100
Bioconductor/BiocContributions#190 · 19 comments ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 4/5 3-5 days Newbie friendliness 38/100
Bioconductor/DelayedArray#129 · 4 comments ·
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Difficulty 4/5 3-5 days Newbie friendliness 55/100
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scGenePanel OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#188 · 7 comments · 1 assignee ·
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path2path OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#187 · 7 comments · 1 assignee ·
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NADIA OpenBuild OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#186 · 9 comments · 1 assignee ·
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IntrinsicScan OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#185 · 6 comments · 1 assignee ·
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OrnTx Openawaiting policy acceptance precheck-passed
Difficulty 5/5 Over a week Newbie friendliness 25/100
Bioconductor/BiocContributions#184 · 2 comments ·
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Difficulty 3/5 1-2 days Newbie friendliness 68/100
Bioconductor/BiocCheck#261 ·
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strainspy OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#182 · 6 comments · 1 assignee ·
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CanvasXpressBio OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#181 · 10 comments · 1 assignee ·
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Difficulty 3/5 1-2 days Newbie friendliness 75/100
Bioconductor/BiocCheck#259 ·
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epiPortrait OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#178 · 9 comments · 1 assignee ·
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GeneTrackR OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#177 · 8 comments · 1 assignee ·
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sceptre OpenBuild OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#176 · 8 comments · 1 assignee ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
Bioconductor/AnVILPublish#20 ·
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RAMEN OpenBuild OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#175 · 7 comments · 1 assignee ·
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cpgdirection OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#174 · 9 comments · 1 assignee ·
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cpgdirectionData OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#173 · 9 comments · 1 assignee ·
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DiPPER OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#172 · 7 comments · 1 assignee ·
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prolfqua OpenBuild OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#171 · 7 comments · 1 assignee ·
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saintexpress OpenBuild OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#170 · 6 comments · 1 assignee ·
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Difficulty 3/5 1-2 days Newbie friendliness 72/100
Bioconductor/S4Vectors#142 ·
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rnaSentry OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#168 · 21 comments · 1 assignee ·
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TweedSpot OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#167 · 6 comments · 1 assignee ·
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dmsa OpenBuild OK Build Warning policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#166 · 15 comments · 1 assignee ·
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Build Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#164 · 11 comments · 1 assignee ·
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RhyME OpenBuild Note Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#163 · 7 comments · 1 assignee ·
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Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#162 · 15 comments · 1 assignee ·
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Build OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#161 · 13 comments · 1 assignee ·
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methylTFR OpenBuild OK policies-accepted precheck-passed review in progress
Bioconductor/BiocContributions#160 · 14 comments · 1 assignee ·
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