Bioconductor/GenomicDataCommons

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Provide R access to the NCI Genomic Data Commons portal.

Stars: 91
Forks: 25
Open beginner issues: 0
Indexed issues: 20

Dominant language: R
License: No license data
Last GitHub push: Apr 28, 2026
Latest indexed: Sep 21, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

20 open issues indexed

NOTE: use <- instead of = Open

Difficulty 1/5 Under an hour Newbie friendliness 25/100

Bioconductor/GenomicDataCommons#119 · Opened Feb 13, 2025
add blurb regarding potential conflicts when loading dplyr Open

enhancement

Bioconductor/GenomicDataCommons#118 · 1 comment · 1 assignee · Opened Feb 13, 2025
gdcdata should not depend on internet connection when cache=TRUE and you have all the files in your local cache Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Bioconductor/GenomicDataCommons#97 · 1 comment · Opened Mar 1, 2022
Making GenomicDataCommons less daunting to use for the average user Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Bioconductor/GenomicDataCommons#94 · Opened Feb 22, 2022
Querying a previous GDC data release version Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Bioconductor/GenomicDataCommons#81 · Opened Sep 9, 2020
Add TSV return format support Open

enhancement

Bioconductor/GenomicDataCommons#75 · 1 assignee · Opened Jan 28, 2020
Add support for GraphQL endpoint Open

enhancement

Bioconductor/GenomicDataCommons#74 · 1 assignee · Opened Jan 28, 2020
Progress Bar Should Display Download Speed Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Bioconductor/GenomicDataCommons#73 · Opened Jul 8, 2019
Clinical data are empty Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Bioconductor/GenomicDataCommons#70 · 3 comments · Opened Apr 24, 2019
Problems on Download some Methylation Beta Value from server Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Bioconductor/GenomicDataCommons#68 · Opened Apr 5, 2019
How to download data using only the samples have normal samples. Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Bioconductor/GenomicDataCommons#64 · Opened Sep 3, 2018
available_rna_seq_workflow returns NULL Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Bioconductor/GenomicDataCommons#63 · Opened Aug 28, 2018
gdc_rnaseq.R: gdc_rnaseq() on workflows other than "HTSeq - Counts" produce errors Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

Bioconductor/GenomicDataCommons#62 · 2 comments · Opened Jul 17, 2018
gdc_rnaseq.R: available_rnaseq_workflows() returns NULL Open

Difficulty 1/5 Under an hour Newbie friendliness 45/100

Bioconductor/GenomicDataCommons#61 · Opened Jul 17, 2018
extract clinical data from previous research Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Bioconductor/GenomicDataCommons#52 · 4 comments · Opened May 16, 2018
Check and retry request with 429 errors Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

Bioconductor/GenomicDataCommons#50 · Opened Apr 26, 2018
expand for deeply-nested fields Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Bioconductor/GenomicDataCommons#47 · 2 comments · Opened Oct 5, 2017
Catch ssl handshake error and suggest fix Open

enhancement

Bioconductor/GenomicDataCommons#38 · 1 assignee · Opened Mar 4, 2017
facets and filters not working when specified together. Open

enhancement

Bioconductor/GenomicDataCommons#27 · 1 comment · 1 assignee · Opened Jan 8, 2017
Describe RESTful APIs in overview vignette Open

enhancement

Bioconductor/GenomicDataCommons#2 · 1 assignee · Opened Jun 20, 2016

Bioconductor/GenomicDataCommons

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