Bioconductor/BiocParallel

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Bioconductor facilities for parallel evaluation

Stars: 69
Forks: 32
Open beginner issues: 0
Indexed issues: 33

Dominant language: R
License: No license data
Last GitHub push: Apr 29, 2026
Latest indexed: Sep 21, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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33 open issues indexed

BatchtoolsParam handles reduce.in.order differently from others Open

Difficulty 3/5 1-2 days Newbie friendliness 65/100

Bioconductor/BiocParallel#286 · 1 comment · Opened May 28, 2026
wrong args for environment subassignment Open

Difficulty 3/5 1-2 days Newbie friendliness 50/100

Bioconductor/BiocParallel#285 · Opened Apr 21, 2026
futile.logger may be archived from CRAN Open

Bioconductor/BiocParallel#284 · 2 comments · 1 assignee · Opened Dec 24, 2025
Problem to kill jobs with Rstudio Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Bioconductor/BiocParallel#283 · 2 comments · Opened Dec 16, 2025
DoparParam: Captured stdout is relayed to stdout for some foreach adapters and stderr for others Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Bioconductor/BiocParallel#277 · Opened May 19, 2025
DoparParam: Disable capturing of stdout? Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Bioconductor/BiocParallel#276 · Opened May 19, 2025
accuracy of doc on bpexportvariables Open

Bioconductor/BiocParallel#275 · 1 assignee · Opened Apr 16, 2025
memory efficient parallel compting Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Bioconductor/BiocParallel#274 · 4 comments · Opened Apr 16, 2025
Installation Failure Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Bioconductor/BiocParallel#273 · 1 comment · Opened Apr 10, 2025
Build fails: `error: no matching function for call to 'get_rounded_size(const unsigned int:30&, const std::size_t&)'` Open

Difficulty 4/5 3-5 days Newbie friendliness 32/100

Bioconductor/BiocParallel#265 · 3 comments · Opened Feb 2, 2025
BatchtoolsParam fails to propagate errors in bpiterate Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Bioconductor/BiocParallel#257 · 2 comments · Opened Jul 7, 2023
Handle worker abort better Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Bioconductor/BiocParallel#249 · 1 comment · Opened Apr 12, 2023
WISH: Support also SnowParam(type = "PSOCK") Open

Difficulty 3/5 1-2 days Newbie friendliness 65/100

Bioconductor/BiocParallel#231 · 6 comments · Opened Nov 14, 2022
BiocParallel doesn't propagate warnings Open

Difficulty 4/5 3-5 days Newbie friendliness 42/100

Bioconductor/BiocParallel#216 · 3 comments · Opened Jul 20, 2022
BiocParallel.so: undefined symbol: getrandom Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Bioconductor/BiocParallel#139 · 1 reaction · Opened Mar 16, 2021
BiocParallel:::.batchtoolsClusterAvailable() mistakes Torque for SGE Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

Bioconductor/BiocParallel#128 · Opened Nov 25, 2020
BiocParallel fail to start with MPI Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Bioconductor/BiocParallel#120 · 2 comments · Opened Jul 28, 2020
Revise default param registration Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

Bioconductor/BiocParallel#119 · 5 comments · Opened Jul 9, 2020
ROBUSTNESS: Detect when forked process terminates Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Bioconductor/BiocParallel#112 · Opened Mar 5, 2020
Import of BigWig files with rtracklayer fails under MultiCoreParam Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Bioconductor/BiocParallel#111 · 21 comments · Opened Mar 4, 2020
BatchtoolsParam and bpiterate: registry not empty error Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Bioconductor/BiocParallel#107 · 1 reaction · Opened Dec 10, 2019
Parallelization problems on Ubuntu Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Bioconductor/BiocParallel#106 · 5 comments · 2 reactions · Opened Dec 2, 2019
Making register() a generic Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

Bioconductor/BiocParallel#104 · 1 comment · Opened Sep 18, 2019
BiocParallel does not keep logs during job failure Open

Bioconductor/BiocParallel#103 · 2 comments · 1 assignee · Opened Sep 4, 2019
Use of DoparParam Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Bioconductor/BiocParallel#97 · 1 comment · Opened Mar 22, 2019
usage of sockets by MulticoreParam Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Bioconductor/BiocParallel#85 · 11 comments · Opened Oct 24, 2018
Error using BiocParallel on Travis Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

Bioconductor/BiocParallel#61 · 5 comments · Opened Dec 30, 2016
Allow recovery from fatal worker error Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 45/100

Bioconductor/BiocParallel#53 · Opened Jan 25, 2016
Loading an (arbitrary) package slows down bplapply() Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Bioconductor/BiocParallel#47 · 1 comment · Opened Dec 21, 2015
split/apply/combine paradigm Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

Bioconductor/BiocParallel#29 · 6 comments · Opened Dec 12, 2013
Automatically check that user code references exported, local, or attached package variables Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

Bioconductor/BiocParallel#26 · 2 comments · Opened Nov 6, 2013
Add bpexport functionality Open

enhancement

Bioconductor/BiocParallel#24 · 9 comments · 1 assignee · Opened Nov 6, 2013
Tests involving Bioconductor objects Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Bioconductor/BiocParallel#9 · 2 comments · Opened Dec 8, 2012

Bioconductor/BiocParallel

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