AllenNeuralDynamics/Rhapso

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An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.

Stars: 9
Forks: 3
Open beginner issues: 0
Indexed issues: 17

Dominant language: Python
License: MIT
Last GitHub push: Jul 29, 2026
Latest indexed: Sep 13, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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17 open issues indexed

Feature Detection dsxy and dsz downsampling implementation missing for levels outside the existing multiscales Open

AllenNeuralDynamics/Rhapso#151 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Integration Tests: Attach working XML files for all XML formats and workflows that are supported by Rhapso Open

AllenNeuralDynamics/Rhapso#163 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Refactor multiscale ray integration to the pipeline level so it is agnostic to the distributed environment Open

AllenNeuralDynamics/Rhapso#182 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Implement Multichannel stitching Open

AllenNeuralDynamics/Rhapso#186 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Optimize Split Fusion implementation Open

AllenNeuralDynamics/Rhapso#209 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Implement Phase Correlation based registration Open

AllenNeuralDynamics/Rhapso#232 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Handle intensity adjustments in multiscale for downsampled scales Open

AllenNeuralDynamics/Rhapso#233 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Resolve Zarr v3 + fsspec/s3fs async aiohttp sessions unclosed after S3 reads/writes. Open

AllenNeuralDynamics/Rhapso#250 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Add matchviz like metrics Open

AllenNeuralDynamics/Rhapso#253 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Test failures in main Open

AllenNeuralDynamics/Rhapso#264 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Run Tests workflow is disabled Open

AllenNeuralDynamics/Rhapso#265 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Upgrade to python 3.12 for Tiff support Open

AllenNeuralDynamics/Rhapso#275 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Update multiscale zarr metadata ordering Open

AllenNeuralDynamics/Rhapso#280 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add round 2 round registration Open

AllenNeuralDynamics/Rhapso#285 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026
Add compression params for fusion and multiscale Open

AllenNeuralDynamics/Rhapso#289 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add intensity-based candidate matching and RANSAC over full point set for R2R Open

AllenNeuralDynamics/Rhapso#292 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026
Add r2r visualization metrics for TPS displacement field solving Open

AllenNeuralDynamics/Rhapso#293 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026

AllenNeuralDynamics/Rhapso

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