AaronRipleyQiagen / AaronRipleyQiagen/NMDX-Data-Analysis
Write a function that takes a Gen2 data file to create summary tables
- Dominant language
- Jupyter Notebook
- Stars
- 2
- Forks
- 1
- PR merge metrics
- No merged PRs in 30d
Description
The summary table should include:
1. Total data points.
2. What type of assay.
3. Invalid rate in each category and combined. (UNR IND NR)
4. All systems that was used. Return a list of systems.
5. All cartridge that was used. Return a list of cartridges.
6. All cartridge that was used. Return a list of cartridges.
7. All module that was used. Return a list of modules.
Contributor guide
No contributing guide indexed for this repository
Research direction
Look for existing data processing functions in the repository to understand the Gen2 data file format. The function needs to parse the file, calculate totals and rates for categories UNR, IND, NR, and extract unique lists of systems, cartridges, and modules. Check for any tests or example notebooks to see how results should be structured.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100