AaronRipleyQiagen / AaronRipleyQiagen/NMDX-Data-Analysis

Write a function that takes a Gen2 data file to create summary tables

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#31 0 comments 0 reactions 1 assignee Claimed by @CaineS-Q View on GitHub
enhancement
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Description

The summary table should include:
1. Total data points.
2. What type of assay.
3. Invalid rate in each category and combined. (UNR IND NR)
4. All systems that was used. Return a list of systems.
5. All cartridge that was used. Return a list of cartridges.
6. All cartridge that was used. Return a list of cartridges.
7. All module that was used. Return a list of modules.

Contributor guide

No contributing guide indexed for this repository

Research direction

Look for existing data processing functions in the repository to understand the Gen2 data file format. The function needs to parse the file, calculate totals and rates for categories UNR, IND, NR, and extract unique lists of systems, cartridges, and modules. Check for any tests or example notebooks to see how results should be structured.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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