Owner

waldronlab

15 indexed repositories · View on GitHub

• curatedMetagenomicData

  Curated Metagenomic Data of the Human Microbiome

  R · 161 stars

• curatedTCGAData

  Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

  R · 46 stars

• curatedMetagenomicDataCuration

  Sample Metadata Curation for curatedMetagenomicData

  R · 32 stars

• TCGAutils

  Toolbox package for organizing and working with TCGA data

  R · 31 stars

• BugSigDB

  A microbial signatures database

  PHP · 9 stars

• CNVRanger

  Functionality for CNV analysis

  R · 8 stars

• BugSigDBExports

  BugSigDB data files

  R · 5 stars

• bugSigSimple

  Simple exploratory analysis of curated microbe signatures

  R · 4 stars

• agent-protocol-standard

  Standard to define citable scientific protocols for use by AI agents

  Python · 3 stars

• bedbaser

  An R client for bedbase.org

  R · 3 stars

• imageFeatureTCGA

  R · 2 stars

• bioanalyzer-backend

  Streamline BugSigDB curation with AI-powered scientific paper analysis. Automatically extracts essential microbiome study metadata from r...

  Python · 2 stars

• stormsmicrobiome

  Versioning for the STORMS microbiome checklist

  0 stars

• agent-protocols

  Waldron Lab AI agent protocols — a content node in the agent-protocol-standard federation

  0 stars

• curator-desk

  Curator dashboard for reviewing BioAnalyzer predictions — sortable table, field-level feedback, submit via GitHub Issues

  R · 0 stars