waldronlab/BugSigDB

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A microbial signatures database

Stars: 9
Forks: 9
Open beginner issues: 0
Indexed issues: 21
Avg merge: 1h 56m
Merged PRs (30d): 4

Dominant language: PHP
License: No license data
Last GitHub push: Sep 14, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

Open All

21 open issues indexed

Duplicated experiments become orphaned and do not appear on the main study page Open

Difficulty 3/5 1-2 days Newbie friendliness 58/100

waldronlab/BugSigDB#348 · Opened Sep 17, 2026
Study page 42278997 does not display study information or controls (Edit, History, Delete, and Add a new Experiment buttons) Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

waldronlab/BugSigDB#347 · Opened Sep 17, 2026
Bugphyzz Integration: Data Import Pipeline Open

enhancement Y8 dev tasks

Difficulty 5/5 Over a week Newbie friendliness 28/100

waldronlab/BugSigDB#336 · Opened Jul 31, 2026
Add Submission Provenance Tracking Open

enhancement Y8 dev tasks

Difficulty 5/5 Over a week Newbie friendliness 38/100

waldronlab/BugSigDB#334 · Opened Jul 31, 2026
Hover on condition name doesn't provide a brief explanation Open

wishlist

waldronlab/BugSigDB#329 · 3 comments · 1 assignee · Opened Jun 19, 2026
Guidelines for Reporting Bugs on BugsigDB Open

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

waldronlab/BugSigDB#326 · 1 comment · 2 reactions · Opened Jun 3, 2026
Add Reviewed status to Study, Experiment, Signature exports Open

enhancement Y8 dev tasks

waldronlab/BugSigDB#302 · 4 comments · 1 reaction · 1 assignee · Opened Nov 20, 2025
MetaPhlAn taxon names didn't have domain, then had domain, now don't have domain again Open

waldronlab/BugSigDB#278 · 8 comments · 1 reaction · 1 assignee · Opened Aug 1, 2025
Users should be able to quickly narrow down results based on taxon, body site, and condition Open

enhancement

waldronlab/BugSigDB#275 · 3 comments · 1 reaction · 1 assignee · Opened Jul 20, 2025
Document how to run BugSigDb locally Open

waldronlab/BugSigDB#261 · 22 comments · 1 assignee · Opened Mar 11, 2025
Make a simple Disbiome-like table Open

enhancement

waldronlab/BugSigDB#258 · 4 comments · 1 assignee · Opened Feb 7, 2025
Switch taxon lookup away from NCBI (was: Incomplete display of Study 1103) Open

waldronlab/BugSigDB#248 · 18 comments · 1 assignee · Opened Sep 28, 2024
Display studies when there is an apostrophe in a Condition Open

enhancement

waldronlab/BugSigDB#223 · 8 comments · 1 reaction · 1 assignee · Opened Mar 19, 2024
Resource for linking pubmed to medical concepts Open

low priority

Difficulty 5/5 Over a week Newbie friendliness 25/100

waldronlab/BugSigDB#185 · Opened Aug 6, 2023
Cascading deletion Open

blocked enhancement low priority

waldronlab/BugSigDB#176 · 3 comments · 1 reaction · 1 assignee · Opened Apr 18, 2023
Never re-use Study IDs (was: Wrong experiment associated with study_567) Open

bug

waldronlab/BugSigDB#143 · 51 comments · 1 assignee · Opened Jul 1, 2022
utilize ontology hierarchies in browsing features Open

blocked wishlist

Difficulty 5/5 Over a week Newbie friendliness 35/100

waldronlab/BugSigDB#89 · 3 comments · Opened Jul 9, 2021
No way to get to experiment/signature pages from the parent study Open

enhancement low priority

Difficulty 3/5 1-2 days Newbie friendliness 45/100

waldronlab/BugSigDB#64 · Opened Feb 11, 2021
No information about parent experiment/study on the study/sig pages Open

enhancement low priority

Difficulty 4/5 3-5 days Newbie friendliness 32/100

waldronlab/BugSigDB#63 · Opened Feb 11, 2021
No way to browse non-NCBI taxa Open

enhancement low priority

Difficulty 3/5 1-2 days Newbie friendliness 35/100

waldronlab/BugSigDB#61 · Opened Feb 11, 2021
Calculate some similarity measures Open

enhancement

waldronlab/BugSigDB#43 · 9 comments · 2 assignees · Opened Nov 19, 2020

waldronlab/BugSigDB

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