pybind / pybind/python_example
Libopenblas issues in conda build when adding <pybind11/numpy.h> functionality on OSX
まだ誰も着手していません。
- 主要言語
- Python
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- フォーク
- 150
- 平均マージ
- 8日 2時間
- マージ済み PR(30日)
- 1
説明
If I clone this repo, it works great. If I add some simple pybind11/numpy functionality (passing a numpy array in and out), I run into trouble on OSX, when trying to build a conda package.
- Doing a pip install in my conda env is fine; compiles, links, passes tests. Though I have not tried relocating the wheel to another env than the one it is built in, which I suspect might trigger the same problem.
- The conda build works just fine on linux.
- Obviously, I did add numpy to both my host and run requirements. But it cant find libopenblas when invoking the test. libopenblas and liblapack are in the test environment as you would expect, them being a numpy dependency.
- Problem happens regardless of python version on OSX
Perhaps adding a little pybind/numpy to this example repo would be cool. Probably this is something simple that more seasoned OSX-linking-gurus can spot easily, but it eludes me after a few days of messing around with it.
Here is what the conda build tests have to say:
Hint: make sure your test modules/packages have valid Python names.
Traceback:
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.8/importlib/__init__.py:127: in import_module
return _bootstrap._gcd_import(name[level:], package, level)
tests/test_pyopcode.py:1: in <module>
import numpy as np
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.8/site-packages/numpy/__init__.py:142: in <module>
from . import add_newdocs
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.8/site-packages/numpy/add_newdocs.py:13: in <module>
from numpy.lib import add_newdoc
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.8/site-packages/numpy/lib/__init__.py:8: in <module>
from .type_check import *
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.8/site-packages/numpy/lib/type_check.py:11: in <module>
import numpy.core.numeric as _nx
../_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pl/lib/python3.8/site-packages/numpy/core/__init__.py:14: in <module>
from . import multiarray
E ImportError: dlopen($PREFIX/lib/python3.8/site-packages/numpy/core/multiarray.cpython-38-darwin.so, 2): Library not loaded: @rpath/libopenblas.dylib
E Referenced from: $PREFIX/lib/python3.8/site-packages/numpy/core/multiarray.cpython-38-darwin.so
E Reason: image not found
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- issue 番号を参照したプルリクエストを送ります。
調査の方向性
まず、tests/test_pyopcode.py とそこからの numpy の import を入口として、テスト環境で OSX 上の conda-build の失敗を再現します。conda パッケージとテスト環境がどのように libopenblas を公開しているかを調べ、その後 numpy が正常に import でき、既存のテストが OSX 上で成功することを確認します。
索引モデルが issue の本文から書いたものです。
評価
- 技術スタック
- numpy, python
- 領域
- build-system
- issue の種類
- バグ
- 難易度
- 4/5
- 見積もり時間
- 3〜5日
- 活発さ
- 停滞
- 明瞭さ
- 説明が足りない
- 初心者へのやさしさ
- 30/100