Owner

populationgenomics

18 indexed repositories · View on GitHub

• talos

  Rare Disease variant reanalysis tool

  Python · 83 stars

• production-pipelines

  Genomics workflows for CPG using Hail Batch

  Python · 12 stars

• cpg-infrastructure

  This repository is used to manage the infrastructure at the CPG

  Python · 6 stars

• team-docs

  Documentation, guides, tips and tricks when working at the CPG

  Python · 3 stars

• hgvs-weaver

  Rust · 3 stars

• metamist

  Sample level metadata system

  Python · 3 stars

• references

  Reference data for bioinformatics workflows

  Python · 2 stars

• sv-workflows

  Structural Variation Workflows

  Python · 2 stars

• analysis-runner

  Python · 2 stars

• images

  Reusable single-software docker images

  Dockerfile · 1 star

• cpg-utils

  Library of convenience functions specific to the CPG

  Python · 0 stars

• xsd-former

  XSDFormer deforms XML schemas and data into protobufs.

  Python · 0 stars

• cpg-flow-align-genotype

  Python · 0 stars

• cpg-flow-lrs-annotation

  For creating annotated callsets for seqr from long-read-sequencing data

  Python · 0 stars

• cpg-flow

  CPG Pipeline Python API

  Python · 0 stars

• popgen-genotyping

  A pipeline to process genotyping microarray data using CPG Flow

  Python · 0 stars

• cpg-flow-gatk-sv

  CPG-Flow implementation of the GATK-SV pipeline, deployed at the Centre for Population Genomics

  Python · 0 stars

• cpg-flow-seqr-loader

  Python · 0 stars