Owner
populationgenomics
18 indexed repositories · View on GitHub
-
talos
Rare Disease variant reanalysis tool
Python · 83 stars
-
production-pipelines
Genomics workflows for CPG using Hail Batch
Python · 12 stars
-
cpg-infrastructure
This repository is used to manage the infrastructure at the CPG
Python · 6 stars
-
team-docs
Documentation, guides, tips and tricks when working at the CPG
Python · 3 stars
-
Rust · 3 stars
-
metamist
Sample level metadata system
Python · 3 stars
-
references
Reference data for bioinformatics workflows
Python · 2 stars
-
sv-workflows
Structural Variation Workflows
Python · 2 stars
-
Python · 2 stars
-
images
Reusable single-software docker images
Dockerfile · 1 star
-
cpg-utils
Library of convenience functions specific to the CPG
Python · 0 stars
-
xsd-former
XSDFormer deforms XML schemas and data into protobufs.
Python · 0 stars
-
Python · 0 stars
-
cpg-flow-lrs-annotation
For creating annotated callsets for seqr from long-read-sequencing data
Python · 0 stars
-
cpg-flow
CPG Pipeline Python API
Python · 0 stars
-
popgen-genotyping
A pipeline to process genotyping microarray data using CPG Flow
Python · 0 stars
-
cpg-flow-gatk-sv
CPG-Flow implementation of the GATK-SV pipeline, deployed at the Centre for Population Genomics
Python · 0 stars
-
Python · 0 stars
-
Difficulty 3/5 1-2 days Newbie friendliness 68/100
-
Difficulty 3/5 1-2 days Newbie friendliness 68/100
-
Difficulty 3/5 1-2 days Newbie friendliness 52/100
populationgenomics/talos#712 · 3 comments ·
-
enhancement
populationgenomics/cpg-flow-align-genotype#78 · 1 assignee ·
-
Difficulty 5/5 Over a week Newbie friendliness 42/100
populationgenomics/xsd-former#30 · 1 comment ·
-
bug low priority
Difficulty 5/5 Over a week Newbie friendliness 35/100
populationgenomics/metamist#1310 ·
-
Difficulty 3/5 1-2 days Newbie friendliness 52/100
-
populationgenomics/cpg-flow-lrs-annotation#48 · 1 assignee ·
-
Difficulty 4/5 3-5 days Newbie friendliness 52/100
populationgenomics/metamist#1291 ·
-
Difficulty 3/5 1-2 days Newbie friendliness 66/100
populationgenomics/metamist#1287 ·
-
enhancement
Difficulty 3/5 1-2 days Newbie friendliness 55/100
-
enhancement
Difficulty 3/5 1-2 days Newbie friendliness 68/100
-
Difficulty 2/5 1-3 hours Newbie friendliness 72/100
-
populationgenomics/talos#653 · 1 assignee ·
-
Difficulty 3/5 1-2 days Newbie friendliness 25/100
populationgenomics/talos#644 ·
-
Difficulty 4/5 3-5 days Newbie friendliness 38/100
populationgenomics/talos#643 ·
-
populationgenomics/cpg-flow-lrs-annotation#38 · 2 comments · 1 assignee ·
-
populationgenomics/talos#638 · 1 assignee ·
-
populationgenomics/cpg-flow-seqr-loader#26 · 2 assignees ·
-
populationgenomics/cpg-flow#151 · 1 assignee ·
-
Phenotype match Open
Difficulty 3/5 1-2 days Newbie friendliness 45/100
populationgenomics/talos#624 · 2 comments ·
-
enhancement
Difficulty 5/5 Over a week Newbie friendliness 35/100
populationgenomics/cpg-flow#146 ·
-
Difficulty 3/5 1-2 days Newbie friendliness 48/100
populationgenomics/cpg-flow#128 ·
-
populationgenomics/cpg-flow-align-genotype#14 · 2 assignees ·
-
Update various bits Open
populationgenomics/cpg-flow-gatk-sv#21 · 1 assignee ·
-
Difficulty 4/5 3-5 days Newbie friendliness 25/100
-
Difficulty 4/5 3-5 days Newbie friendliness 25/100
-
Difficulty 5/5 Over a week Newbie friendliness 25/100
-
Difficulty 4/5 3-5 days Newbie friendliness 35/100
populationgenomics/cpg-flow#118 ·
-
populationgenomics/cpg-flow-gatk-sv#10 · 1 assignee ·
-
Difficulty 4/5 3-5 days Newbie friendliness 35/100
-
populationgenomics/production-pipelines#1258 · 3 assignees ·
-
Pre-Build Container Open
Difficulty 4/5 3-5 days Newbie friendliness 50/100
populationgenomics/talos#539 · 5 comments ·
-
populationgenomics/production-pipelines#1211 · 2 assignees ·
-
rare disease
populationgenomics/production-pipelines#1206 · 2 assignees ·
-
Difficulty 4/5 3-5 days Newbie friendliness 35/100
populationgenomics/images#219 · 1 comment ·
-
Difficulty 3/5 1-2 days Newbie friendliness 45/100
populationgenomics/metamist#1050 ·
-
Difficulty 5/5 Over a week Newbie friendliness 25/100
-
bug enhancement rare disease
populationgenomics/production-pipelines#1162 · 1 assignee ·
-
enhancement rare disease
populationgenomics/production-pipelines#1161 · 2 assignees ·
-
populationgenomics/references#68 · 1 assignee ·
-
Need a check early in the Combiner pipeline to make sure whole sample set is in the combined callset Openrare disease
populationgenomics/production-pipelines#1149 · 2 assignees ·
-
Difficulty 4/5 3-5 days Newbie friendliness 35/100
-
rare disease
populationgenomics/production-pipelines#1135 · 1 assignee ·
-
populationgenomics/cpg-flow#69 · 1 comment · 1 assignee ·
-
Difficulty 4/5 3-5 days Newbie friendliness 45/100
populationgenomics/metamist#1022 ·
-
populationgenomics/production-pipelines#1121 · 1 comment · 1 reaction · 3 assignees ·
-
enhancement shared
Difficulty 5/5 Over a week Newbie friendliness 35/100
populationgenomics/production-pipelines#1117 · 1 comment ·
-
enhancement shared
Difficulty 3/5 1-2 days Newbie friendliness 52/100
-
enhancement
Difficulty 5/5 Over a week Newbie friendliness 25/100
Showing the newest 100
This page lists what was indexed most recently. Advanced filter has the whole inventory, narrowed by language, difficulty and how long a task takes.