populationgenomics/cpg-flow

CPG Pipeline Python API

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7 open issues indexed

Generating workflow graph fixes and improvements Open

populationgenomics/cpg-flow#151 · 1 assignee · Opened Feb 5, 2026
Suggested improvements for Metamist analysis IO Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

populationgenomics/cpg-flow#146 · Opened Dec 19, 2025
Analysis types in metamist.py not consistent with Metamist Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

populationgenomics/cpg-flow#128 · Opened Sep 11, 2025
Workflow generation should fail if no cohorts are provided Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

populationgenomics/cpg-flow#118 · Opened Jul 8, 2025
Multiple Valid CRAMs/GVCFs Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

populationgenomics/cpg-flow#80 · Opened Apr 2, 2025
Investigate python 3.10 pin Open

populationgenomics/cpg-flow#69 · 1 comment · 1 assignee · Opened Feb 5, 2025
Consider MutliCohort Target Name Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

populationgenomics/cpg-flow#52 · Opened Jan 12, 2025

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