openvax/varcode
View on GitHubLibrary for manipulating genomic variants and predicting their effects
- Stars
- 87
- Forks
- 28
- Open beginner issues
- 0
- Indexed issues
- 47
- Avg merge
- 3h 27m
- Merged PRs (30d)
- 27
- Dominant language
- Python
- License
- Apache-2.0
- Last GitHub push
- Sep 19, 2026
- Latest indexed
- Sep 20, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- No beginner labels indexed
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Difficulty 3/5 1-2 days Newbie friendliness 68/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 42/100
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Difficulty 4/5 3-5 days Newbie friendliness 52/100
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Difficulty 5/5 Over a week Newbie friendliness 42/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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UCSC unplaced contigs (chrUn_gl000216) aren't mapped, and one aborts annotation of the whole VCF Open
Difficulty 4/5 3-5 days Newbie friendliness 68/100
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Difficulty 4/5 3-5 days Newbie friendliness 52/100
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
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CLI prints results as a logger repr on stdout; varcode and varcode-genes CSVs use different columns Open
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Difficulty 5/5 Over a week Newbie friendliness 20/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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SV effect classes name the variant type, not the consequence; classify the mutant transcript instead Open
Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 64/100
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Difficulty 4/5 3-5 days Newbie friendliness 38/100
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 45/100
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 28/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 3/5 1-2 days Newbie friendliness 52/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 20/100
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100