Add variant and effect classes for gene fusions
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 87
- Forks
- 28
- Avg merge
- 3h 27m
- Merged PRs (30d)
- 27
Description
Ideally this would allow for multi-gene fusions
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing varcode’s existing variant and effect class structure and how genomic fusions are currently represented. Identify the relevant tests or entry points before defining support for multi-gene fusions; done should mean variant and effect classes represent the requested fusion cases and the behavior is covered by tests.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100