Owner

ome

36 indexed repositories · View on GitHub

• bioformats

  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E...

  Java · 429 stars

• ome-zarr-py

  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python · 258 stars

• openmicroscopy

  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological ...

  Java · 222 stars

• ngff

  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python · 171 stars

• napari-ome-zarr

  A napari plugin for zarr backed OME-NGFF images

  Python · 54 stars

• napari-omero

  Browse your OMERO database from within napari.

  Python · 40 stars

• omero-py

  Python project containing Ice remoting code for OMERO

  Python · 28 stars

• omero-web

  Django-based OMERO.web client

  Python · 24 stars

• omero-documentation

  Sphinx-based documentation for the Open Microscopy Environment

  Python · 24 stars

• omero-cli-zarr

  Python · 22 stars

• omero-figure

  An OMERO.web app for creating Figures from images in OMERO

  JavaScript · 22 stars

• omero-iviewer

  An OMERO.web app allowing to view images

  JavaScript · 20 stars

• devspace

  Continuous integration tool for OME projects

  Shell · 19 stars

• omero-server-docker

  OMERO.server production docker image

  Shell · 17 stars

• ome-model

  OME model (specification, code generator, implementation)

  XSLT · 17 stars

• ngff-spec

  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python · 14 stars

• ome-ngff-validator

  Web page for validating OME-NGFF files

  Svelte · 12 stars

• omero-guide-python

  Jupyter Notebook · 10 stars

• omero-metadata

  OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/

  Python · 10 stars

• bio-formats-documentation

  Bio-Formats documentation

  Java · 9 stars

• 16 more repositories live on View on GitHub