Owner
ome
36 indexed repositories · View on GitHub
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bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E...
Java · 429 stars
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ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Python · 258 stars
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openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological ...
Java · 222 stars
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ngff
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Python · 171 stars
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napari-ome-zarr
A napari plugin for zarr backed OME-NGFF images
Python · 54 stars
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napari-omero
Browse your OMERO database from within napari.
Python · 40 stars
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omero-py
Python project containing Ice remoting code for OMERO
Python · 28 stars
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omero-web
Django-based OMERO.web client
Python · 24 stars
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omero-documentation
Sphinx-based documentation for the Open Microscopy Environment
Python · 24 stars
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Python · 22 stars
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omero-figure
An OMERO.web app for creating Figures from images in OMERO
JavaScript · 22 stars
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omero-iviewer
An OMERO.web app allowing to view images
JavaScript · 20 stars
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devspace
Continuous integration tool for OME projects
Shell · 19 stars
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omero-server-docker
OMERO.server production docker image
Shell · 17 stars
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ome-model
OME model (specification, code generator, implementation)
XSLT · 17 stars
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ngff-spec
Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Python · 14 stars
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ome-ngff-validator
Web page for validating OME-NGFF files
Svelte · 12 stars
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Jupyter Notebook · 10 stars
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omero-metadata
OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/
Python · 10 stars
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bio-formats-documentation
Bio-Formats documentation
Java · 9 stars
- 16 more repositories live on View on GitHub
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Difficulty 3/5 1-2 days Newbie friendliness 68/100
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Difficulty 3/5 1-2 days Newbie friendliness 62/100
ome/omero-figure#709 · 2 comments ·
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
ome/ome-zarr-py#659 ·
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
ome/omero-figure#708 ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
ome/ome-zarr-py#658 ·
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Difficulty 5/5 Over a week Newbie friendliness 38/100
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Difficulty 2/5 1-3 hours Newbie friendliness 64/100
ome/ome-zarr-py#655 ·
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Add stats on tools? Open
Difficulty 5/5 Over a week Newbie friendliness 35/100
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documentation rfc
Difficulty 5/5 Over a week Newbie friendliness 30/100
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RFC-8 support Open
Difficulty 5/5 Over a week Newbie friendliness 35/100
ome/ome-ngff-validator#87 ·
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
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Difficulty 2/5 1-3 hours Newbie friendliness 78/100
ome/ome-zarr-py#640 · 1 comment ·
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Difficulty 2/5 1-3 hours Newbie friendliness 75/100
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Difficulty 2/5 1-3 hours Newbie friendliness 75/100
ome/ome-zarr-py#634 · 12 comments ·
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Difficulty 2/5 1-3 hours Newbie friendliness 68/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
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infra
Difficulty 4/5 3-5 days Newbie friendliness 38/100
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Difficulty 2/5 Half a day Newbie friendliness 67/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
ome/ome-zarr-py#627 · 4 comments ·
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rfc-4
Difficulty 4/5 3-5 days Newbie friendliness 72/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
ome/ome-common-java#119 ·
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More tests Open
Difficulty 3/5 1-2 days Newbie friendliness 45/100
ome/ome-zarr-py#626 ·
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infra
Difficulty 3/5 1-2 days Newbie friendliness 58/100
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
ome/omero-figure#702 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 68/100
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Difficulty 1/5 Under an hour Newbie friendliness 25/100
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Difficulty 2/5 1-3 hours Newbie friendliness 76/100
ome/omero-figure#699 · 1 comment ·
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scoping
Difficulty 5/5 Over a week Newbie friendliness 25/100
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ome/bioformats#4477 · 1 reaction · 2 assignees ·
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Build system cleanup Open
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Difficulty 2/5 1-3 hours Newbie friendliness 52/100
ome/ome-contributing#46 · 3 comments ·
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documentation
Difficulty 3/5 1-2 days Newbie friendliness 48/100
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Benchmarking Opendocumentation
Difficulty 5/5 Over a week Newbie friendliness 35/100
ome/ome-zarr-py#618 ·
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Difficulty 3/5 1-2 days Newbie friendliness 68/100
ome/bioformats#4475 ·
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Difficulty 3/5 1-2 days Newbie friendliness 72/100
ome/bioformats#4474 ·
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Difficulty 4/5 3-5 days Newbie friendliness 64/100
ome/bioformats#4473 ·
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Difficulty 3/5 1-2 days Newbie friendliness 65/100
ome/bioformats#4472 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 82/100
ome/bioformats#4471 ·
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Difficulty 4/5 3-5 days Newbie friendliness 52/100
ome/bioformats#4469 ·
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Progress indication Open
Difficulty 4/5 3-5 days Newbie friendliness 45/100
ome/ome-zarr-py#616 ·
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documentation
Difficulty 2/5 1-3 hours Newbie friendliness 72/100
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Difficulty 2/5 1-3 hours Newbie friendliness 68/100
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Difficulty 3/5 1-2 days Newbie friendliness 68/100
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bug
Difficulty 4/5 3-5 days Newbie friendliness 45/100
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
ome/www.openmicroscopy.org#883 · 1 comment · 1 reaction ·
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