nf-core/sammyseq

Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.

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5 open issues indexed

Check if paired end reads are managed properly and if not: either fix or document properly Open

Difficulty 4/5 3-5 days Newbie friendliness 42/100

nf-core/sammyseq#127 · Opened Jul 27, 2026
Add correlation analysis for comparison tracks Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 45/100

nf-core/sammyseq#121 · Opened Nov 6, 2025
IGV local module addition Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/sammyseq#99 · Opened Oct 24, 2025
Add --step parameter for flexible usability Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/sammyseq#75 · Opened May 29, 2025
Update the test data adding also some paired-end samples Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

nf-core/sammyseq#64 · Opened Mar 25, 2025

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