Add --step parameter for flexible usability
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Nextflow
- Stars
- 4
- Forks
- 16
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
- add --step parameter (as inspired by sarek) to allow starting the workflow midway
- add support for bam (cram?) and bigwig files in the samplesheet and not only fastq
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the workflow entry point and the samplesheet handling in the sammyseq repository. Review how runs currently begin and which input formats are accepted. Done means the workflow can start from an intermediate step and the samplesheet supports the requested BAM/CRAM and BigWig inputs.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100