nf-core / nf-core/sammyseq

IGV local module addition

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Dominant language
Nextflow
Stars
4
Forks
16
PR merge metrics
No merged PRs in 30d

Description

Addition of an IGV (Integrative Genomics Viewer) local module to generate .xml session files to facilitate results visualisation

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

The issue names an IGV local module and generated XML session files but provides no file, test, or entry point. Start by locating the pipeline's module conventions and determine which results the IGV sessions must represent; done means the module generates usable session files for the relevant visualisation workflow.

Written by the indexing model from the issue text.

Assessment

Tech stack
xml
Domain
bioinformatics, data-visualization
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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