nf-core/gwas

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UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies

Stars: 28
Forks: 28
Open beginner issues: 0
Indexed issues: 19

Dominant language: Nextflow
License: MIT
Last GitHub push: Aug 12, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: help wanted
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

19 open issues indexed

Proposed First Release Scope Open

enhancement

nf-core/gwas#92 · 2 comments · 2 assignees · Opened Jul 9, 2026
Add nf-core BOLT REML module Open

nf-core/gwas#87 · 1 assignee · Opened Mar 22, 2026
Add nf-core LDAK modules Open

nf-core/gwas#86 · 1 assignee · Opened Mar 19, 2026
Update plink/gwas module Open

nf-core/gwas#85 · 1 assignee · Opened Mar 18, 2026
Add nf-core HDL modules Open

nf-core/gwas#84 · 1 assignee · Opened Mar 16, 2026
Existing dev release in master branch for QC Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nf-core/gwas#82 · Opened Mar 15, 2026
Add nf-core GCTA modules Open

nf-core/gwas#80 · 1 assignee · Opened Mar 13, 2026
Add nf-core REGENIE modules Open

nf-core/gwas#79 · 1 assignee · Opened Mar 13, 2026
Add Plink2 Convert module Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

nf-core/gwas#77 · Opened Mar 12, 2026
Add validation of file inputs Open

enhancement

nf-core/gwas#67 · 1 assignee · Opened May 13, 2025
Enter workflow with Mutli-sample VCF Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

nf-core/gwas#50 · Opened Dec 4, 2023
Specify a list of all softaware versions we use in the pipeline Open

help wanted

nf-core/gwas#38 · 1 assignee · Opened Sep 7, 2022
Convert the QC modules nf-core friendly format Open

nf-core/gwas#30 · 1 reaction · 1 assignee · Opened May 14, 2022
Reach feature parity with QC workflow of h3agwas Open

nf-core/gwas#29 · 1 comment · 3 assignees · Opened May 14, 2022
Dataset for GWAS development Open

help wanted question

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nf-core/gwas#24 · 6 comments · Opened Feb 5, 2022
Consider adding the ability to develop scores Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

nf-core/gwas#22 · 1 reaction · Opened Oct 13, 2021
Tools to be explored Open

nf-core/gwas#20 · 5 comments · 1 assignee · Opened Jul 16, 2021
Contribute local modules to nf-core/modules project after gwas launch Open

nf-core/gwas#18 · 1 assignee · Opened Jul 16, 2021
Plan out the modules and subworkflows for v1.0 release Open

WIP

nf-core/gwas#16 · 11 comments · 2 assignees · Opened Jul 15, 2021

nf-core/gwas

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