nf-core / nf-core/gwas

Plan out the modules and subworkflows for v1.0 release

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@Mxrcon is already working on this.

Since Jul 15, 2021.

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Description

For the initial release of the workflow

  • Plan out the overall modules and if not present in nf-core/modules repo, add them here first as local modules

  • Plan out the sub-workflows which constitute the overall workflow

    • Finalize the DAG for the shell scripts in the imputation project => @abhi18av
    • Finalize the exact (sub) commands used for each tool from the list below => @Mxrcon
Rscript
plink
plink2
bcftools
tabix
lift
cpath
Genome Haromonizer
parallel
splity_by_ancestory
bgzip
admixture
eagle
mymap
minimac4
parallel -> might not need

Create the relevant tasks on the project board https://github.com/orgs/nf-core/projects/18?add_cards_query=is%3Aopen

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