nf-core/drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Beginner friendly Everything

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8 open issues indexed

final MultiQC taking a lot of memory yet not finished Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/drop#123 · Opened Sep 16, 2026
Caching not working for FRASER Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 52/100

nf-core/drop#116 · Opened Jul 10, 2026
Add NCBI hg38 and hg19 BSgenomes to the containers Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 58/100

nf-core/drop#112 · Opened Apr 22, 2026
Add CRAM support Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/drop#111 · 1 comment · Opened Apr 13, 2026
failed in running test Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

nf-core/drop#84 · 2 comments · Opened Sep 25, 2025
track changes in scripts vs. snakemake pipelines Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/drop#73 · 3 comments · Opened Aug 21, 2025
test on a real dataset Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

nf-core/drop#61 · 16 comments · Opened Aug 6, 2025
Add all demo data to the nf-core test datasets repository Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

nf-core/drop#14 · 2 comments · Opened May 22, 2025

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