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inab

11 indexed repositories · View on GitHub

trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

C++ · 271 stars
WfExS-backend
Workflow Execution Service Backend

Python · 21 stars
openEBench-nuxt
Vue Client for the OpenEBench Micro Frontends

JavaScript · 3 stars
python-groovy-parser
Repo with a proof of concept of Groovy parser

Python · 2 stars
github-metadata-api
API to extract metadata from a GitHub repository and update files.

JavaScript · 1 star
observatory-api
Software Observatory API

Python · 1 star
openEBench-nuxt-v3
OpenEBench Micro Frontends. Nuxt 3 version

Vue · 1 star
oeb-visualizations
Library of data visualizations for OpenEBench

HTML · 0 stars
OEB_level2_data_migration

Python · 0 stars
research-software-etl
Automated pipeline for extracting, normalizing, and integrating software metadata from diverse sources

Python · 0 stars
openVRE-core-dev
Open Virtual Research Environment development version

PHP · 0 stars

Beginner friendly Everything

Open All

Create FAIRsoft scores card Open

enhancement

inab/openEBench-nuxt-v3#275 · 1 assignee · Opened Sep 8, 2026
Create Availability card Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

inab/openEBench-nuxt-v3#274 · Opened Sep 8, 2026
Create Similar Software card Open

enhancement

inab/openEBench-nuxt-v3#273 · 1 assignee · Opened Sep 8, 2026
Create Licensing card Open

enhancement

inab/openEBench-nuxt-v3#272 · 1 assignee · Opened Sep 8, 2026
Create citation card Open

enhancement

inab/openEBench-nuxt-v3#271 · 1 assignee · Opened Sep 8, 2026
Create documentation card Open

enhancement

inab/openEBench-nuxt-v3#270 · 1 assignee · Opened Sep 8, 2026
Create description card Open

enhancement

inab/openEBench-nuxt-v3#269 · 1 assignee · Opened Sep 8, 2026
Create tab for tools monitoring details Open

enhancement

inab/openEBench-nuxt-v3#268 · 1 assignee · Opened Sep 8, 2026
Dependency Auditing Workshop Open

dependencies

inab/openEBench-nuxt-v3#265 · 1 assignee · Opened Sep 7, 2026
Review and integrate API Open

inab/openVRE-core-dev#38 · 1 assignee · Opened Aug 18, 2026
Workspace table refactor Open

enhancement

inab/openVRE-core-dev#36 · 1 assignee · Opened Jul 29, 2026
Add filters Open

inab/openEBench-nuxt-v3#259 · 1 assignee · Opened Jul 21, 2026
Refactor or add store in pinia about tools Open

inab/openEBench-nuxt-v3#255 · 1 assignee · Opened Jul 21, 2026
Refactor tool details Open

inab/openEBench-nuxt-v3#254 · 1 assignee · Opened Jul 21, 2026
Add layout Open

inab/openEBench-nuxt-v3#253 · 1 assignee · Opened Jul 21, 2026
Refactor Landing page Open

inab/openEBench-nuxt-v3#252 · 1 assignee · Opened Jul 21, 2026
Update tools monitoring to new version Open

enhancement

inab/openEBench-nuxt-v3#251 · 2 assignees · Opened Jul 21, 2026
Switch from python-magic to puremagic Open

inab/WfExS-backend#271 · 1 assignee · Opened May 28, 2026
-ct option ERROR: Not allowed in combination with -in option. Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

inab/trimal#128 · 1 comment · Opened May 6, 2026
For Nextflow workflows, include snapshot of the downloaded plugins in the WRROC Open

enhancement

inab/WfExS-backend#262 · 1 assignee · Opened Apr 17, 2026
[General] Make config file to avoid hardcoded dockerfile Open

inab/openEBench-nuxt-v3#230 · 1 assignee · Opened Apr 9, 2026
current package structure can clash with other packages Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 52/100

inab/research-software-etl#738 · 1 comment · Opened Mar 25, 2026
-resoverlap / -seqoverlap option is extremely slow for very large alignments Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

inab/trimal#127 · 2 comments · Opened Mar 14, 2026
Allow declaring resource restrictions on WRROC import Open

bug

inab/WfExS-backend#254 · 1 assignee · Opened Mar 11, 2026
Transfer resource restrictions to generated Workflow Run RO-Crate Open

bug enhancement

inab/WfExS-backend#253 · 1 assignee · Opened Mar 11, 2026
Make underlying used services more modular Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

inab/openEBench-nuxt#675 · Opened Feb 4, 2026
Hide some challenges for EucanImage Project Space Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

inab/openEBench-nuxt#672 · Opened Nov 10, 2025
Update sequence coordinates after trimming gappy ends Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

inab/trimal#119 · 2 comments · Opened Oct 13, 2025
Embedded calls to `find` in cleanUsersData.php do not scale up Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

inab/openVRE-core-dev#19 · Opened Jul 28, 2025
Improve CI workflows Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

inab/WfExS-backend#187 · Opened Mar 25, 2025
Support containerized workflow engine execution Open

enhancement

inab/WfExS-backend#180 · 1 assignee · Opened Mar 21, 2025
Problem with specific repository Open

invalid

Difficulty 4/5 3-5 days Newbie friendliness 35/100

inab/github-metadata-api#8 · Opened Feb 25, 2025
[General] Add an advert when database is not loading/working Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

inab/openEBench-nuxt-v3#170 · Opened Feb 7, 2025
Explore integration of `bwrap` for enhanced protections Open

enhancement

inab/WfExS-backend#142 · 1 assignee · Opened Dec 19, 2024
[General] Make the cookies advert Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

inab/openEBench-nuxt-v3#139 · Opened Dec 5, 2024
[Evaluator] Empty results when attempting to evaluate certain GitHub repositories Open

inab/openEBench-nuxt#670 · 1 comment · 1 assignee · Opened Nov 27, 2024
Explore using bioblend for Galaxy remote workflow execution Open

inab/WfExS-backend#130 · 1 comment · 1 reaction · 1 assignee · Opened Nov 6, 2024
FAIRsoft Evaluator mixes metadata of different repos Open

bug

inab/openEBench-nuxt#669 · 1 comment · 1 assignee · Opened Oct 31, 2024
FAIRsoft Evaluator PR installation btn opens Metadata Extractor App install Open

bug

inab/openEBench-nuxt#668 · 1 assignee · Opened Oct 31, 2024
[Challenge] Empty challege Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

inab/openEBench-nuxt-v3#132 · Opened Oct 17, 2024
[Intranet] - Challenge Open

inab/openEBench-nuxt-v3#131 · 1 assignee · Opened Oct 16, 2024
Annotate generated images with opencontainers annotations Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

inab/WfExS-backend#123 · Opened Oct 6, 2024
Integrate docstr-coverage , in order measure internal code documentation coverage Open

inab/WfExS-backend#122 · 1 assignee · Opened Oct 4, 2024
Restrict max version of Nextflow engine for DSL1 workflows Open

inab/WfExS-backend#121 · 1 assignee · Opened Sep 24, 2024
[Readme] - Update & refactor readme file for github repository Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

inab/openEBench-nuxt-v3#105 · Opened Sep 23, 2024
[Question] Process for converting JSON response from `metadata/user` endpoint to JSON-LD in Bioschema format for FAIRsoft evaluator Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

inab/github-metadata-api#1 · 1 comment · Opened Sep 14, 2024
[TEST] - Footer Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

inab/openEBench-nuxt-v3#78 · Opened Sep 4, 2024
[TEST] - Navbar Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

inab/openEBench-nuxt-v3#77 · Opened Sep 4, 2024
[TEST] - Home and Landing components Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

inab/openEBench-nuxt-v3#76 · Opened Sep 4, 2024
[TEST] - Coverage test (Pending, first unit test mst be done) Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

inab/openEBench-nuxt-v3#75 · Opened Sep 4, 2024

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