inab/WfExS-backend

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Workflow Execution Service Backend

Stars: 21
Forks: 6
Open beginner issues: 0
Indexed issues: 27
Avg merge: 2d 8h
Merged PRs (30d): 3

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 7, 2026
Latest indexed: Sep 20, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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27 open issues indexed

Switch from python-magic to puremagic Open

inab/WfExS-backend#271 · 1 assignee · Opened May 28, 2026
For Nextflow workflows, include snapshot of the downloaded plugins in the WRROC Open

enhancement

inab/WfExS-backend#262 · 1 assignee · Opened Apr 17, 2026
Allow declaring resource restrictions on WRROC import Open

bug

inab/WfExS-backend#254 · 1 assignee · Opened Mar 11, 2026
Transfer resource restrictions to generated Workflow Run RO-Crate Open

bug enhancement

inab/WfExS-backend#253 · 1 assignee · Opened Mar 11, 2026
Improve CI workflows Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

inab/WfExS-backend#187 · Opened Mar 25, 2025
Support containerized workflow engine execution Open

enhancement

inab/WfExS-backend#180 · 1 assignee · Opened Mar 21, 2025
Explore integration of `bwrap` for enhanced protections Open

enhancement

inab/WfExS-backend#142 · 1 assignee · Opened Dec 19, 2024
Explore using bioblend for Galaxy remote workflow execution Open

inab/WfExS-backend#130 · 1 comment · 1 reaction · 1 assignee · Opened Nov 6, 2024
Annotate generated images with opencontainers annotations Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

inab/WfExS-backend#123 · Opened Oct 6, 2024
Integrate docstr-coverage , in order measure internal code documentation coverage Open

inab/WfExS-backend#122 · 1 assignee · Opened Oct 4, 2024
Restrict max version of Nextflow engine for DSL1 workflows Open

inab/WfExS-backend#121 · 1 assignee · Opened Sep 24, 2024
Allow importing RO-Crates in complex scenarios Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

inab/WfExS-backend#114 · Opened Aug 28, 2024
`dot` dependency should be optional Open

inab/WfExS-backend#72 · 1 assignee · Opened Oct 9, 2023
Introduce codemeta.json Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

inab/WfExS-backend#39 · Opened Mar 22, 2023
Use pyinvoke and Fabric Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

inab/WfExS-backend#36 · Opened Feb 8, 2023
Add several checks in the code to detect containers unavailable for the current hardware architecture Open

inab/WfExS-backend#34 · 1 assignee · Opened Jan 30, 2023
Add support to `dav` and `davs` schemes Open

enhancement

inab/WfExS-backend#25 · 1 comment · 1 assignee · Opened Feb 25, 2022
Record the licence of the workflow in RO-Crate Open

inab/WfExS-backend#19 · 1 assignee · Opened Oct 20, 2021
Add support for `insdc.sra` CURIE Open

enhancement

inab/WfExS-backend#17 · 1 assignee · Opened Sep 30, 2021
Add support to RO-Crate Submission API from WorkflowHub Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 25/100

inab/WfExS-backend#12 · 2 comments · Opened Jul 8, 2021
Add validation capabilities over fetched contents Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

inab/WfExS-backend#10 · 1 comment · Opened Jun 22, 2021
Fetch and store association from workflow step to container from CWL Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

inab/WfExS-backend#8 · Opened Jun 2, 2021
Fetch and store the association process -> container from running Nextflow Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

inab/WfExS-backend#7 · Opened Jun 2, 2021
Try generating an abstract CWL from a Nextflow workflow Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

inab/WfExS-backend#6 · Opened Jun 2, 2021
Generate abstract CWL from Nextflow execution Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

inab/WfExS-backend#5 · Opened Jun 2, 2021
Add support to `encode` CURIE Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

inab/WfExS-backend#3 · Opened May 14, 2021
Create a metadata database to hold upstream metadata associated to remote contents Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

inab/WfExS-backend#2 · Opened May 14, 2021

inab/WfExS-backend

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