havakv/pycox

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Survival analysis with PyTorch

Stars: 995
Forks: 203
Open beginner issues: 0
Indexed issues: 87

Dominant language: Python
License: BSD-2-Clause
Last GitHub push: Sep 4, 2024
Latest indexed: Sep 17, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue
PR merge metrics: No merged PRs in 30d

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87 open issues indexed

Is there really an added value to couple the pycox to torchtuples? Open

enhancement

havakv/pycox#25 · 13 comments · 3 reactions · 0 assignees · Indexed Sep 17, 2026
Hyperparameter tuning in DeepSurv method Open

enhancement good first issue

havakv/pycox#26 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
cox_ph_loss_sorted Open

enhancement good first issue question

havakv/pycox#27 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Discretization error Open

question

havakv/pycox#44 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Predict log partial hazard Open

enhancement good first issue

havakv/pycox#45 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
AssertionError during c-index computation Open

enhancement good first issue

havakv/pycox#46 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Make example notebook on how to use torch optimizers/schedulers, early stopping callbacks etc Open

enhancement

havakv/pycox#50 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Example of how to use time-dependent covariates Open

havakv/pycox#56 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
predict survival function Open

havakv/pycox#57 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Thoughts about integration with pytorch-lightning? Open

havakv/pycox#60 · 12 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Evaluation metric Open

havakv/pycox#63 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Survival time predictions (with CoxPH) using medical images Open

enhancement

havakv/pycox#64 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Combining LogisticHazard models Open

havakv/pycox#76 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Dynamic-Deephit Open

havakv/pycox#77 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
How to provide the rank_mat for training deepHit model using the fit_dataloader()? Open

havakv/pycox#79 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Incoporate Time-Varying Data in "CoxCCDataset" function Open

havakv/pycox#87 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Time to event prediction using Graph Neural Networks Open

havakv/pycox#92 · 19 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Is there any method or way to get hazard ratio? Open

havakv/pycox#96 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
How predict just duration (continues value) of test dataset? Open

havakv/pycox#97 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Definitions/ explanations of the data features Open

havakv/pycox#99 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Event weighting for imbalanced datasets Open

havakv/pycox#100 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
How to deal with data about clicks Open

havakv/pycox#101 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Pycox importance variables Open

havakv/pycox#104 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
How can I save and load torchtuple model ? Open

havakv/pycox#105 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
error in Logistic Hazard Label transform Open

havakv/pycox#108 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
How to feed the model multiple inputs? Open

havakv/pycox#109 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
time varying with Deep Learning Open

havakv/pycox#110 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Is it possible to get 1) 95% confidence interval of time-dependent C-index and 2) calibration plot in Pycox package? Open

havakv/pycox#114 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Could you please tell me the pros and cons of your time-dependent C-index, compared to td AUC? Open

havakv/pycox#115 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Training using PyTorch training loop Open

havakv/pycox#117 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
trouble in reading flchain data Open

havakv/pycox#118 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
no loss for training with small batch size, Open

havakv/pycox#124 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Experience in train/val/test partitions with survival data in real-world datasets Open

havakv/pycox#125 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Applying SHAP to pycox models Open

enhancement

havakv/pycox#126 · 8 comments · 4 reactions · 0 assignees · Indexed Sep 17, 2026
Is it possible to apply saliency map or grad-cam with pycox? Open

havakv/pycox#128 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Could not use GPU for pycox Open

havakv/pycox#130 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Use Unet as a net for feeding it to logistichazard Open

havakv/pycox#131 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Facing error for batch size that is greater than 1 Open

havakv/pycox#132 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
logistichazard and coxph basics Open

havakv/pycox#133 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Transfer Learning - DeepHit with competing risk Open

havakv/pycox#134 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Use clinical data in addition to image dataset for survival estimates Open

havakv/pycox#135 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
make a net based on pretrained model Open

havakv/pycox#136 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
same survival probabilities from predict_surv_df Open

havakv/pycox#137 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Add Zenodo or a relevant citation guidance to get cited for the important work you have done Open

havakv/pycox#139 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Output the same for every input (survival curves) Open

havakv/pycox#140 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
[Errno 13] Permission denied: 'lr_finder_checkpoint_2022-8-10_18-30-49_CRHhmhwJPCEIOziQlZ2b.pt' Open

havakv/pycox#141 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Training Time and CPU Usage Open

havakv/pycox#142 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Using logcumsumexp in loss calculation Open

havakv/pycox#144 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Continuous-Time Models Loss Calculation Open

havakv/pycox#145 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026
cite this package Open

havakv/pycox#146 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 17, 2026

havakv/pycox

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