same survival probabilities from predict_surv_df
- Dominant language
- Python
- Stars
- 995
- Forks
- 203
- PR merge metrics
- No merged PRs in 30d
Description
Hi Havard. I am facing a problem for a long time that I can not understand what could be the reason of problem. I used images as inputs to a net that is a kind of Encoder and connect it to fully connected layers. I get good training loss but when it comes to predict_surv_df I can understand for different patients I get same survival probabilities. It is really strange for me. For example I trained a model that I got 0.45 train loss but I got same survival times and same curves for different patients but when I saw your example I could understand you get very good c-index and curves with 1.6 train loss. I have to add before training model completely and for example just with 2 epochs I get different probabilities and different survival times. This problem made me crazy and I can not understand what is the problem.
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Research direction
Start with the predict_surv_df entry point and reproduce the report using the image-input model described in the issue. Compare predictions for different patients before and after training, recording the training setup and outputs. Done requires identifying a reproducible cause or a documented explanation; the issue currently names no files, tests, or minimal example.
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Assessment
- Tech stack
- python, pytorch
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 15/100