Owner

darwin-eu

10 indexed repositories · View on GitHub

CodelistGenerator
Identifying relevant concepts from the OMOP CDM vocabularies

R · 18 stars
CDMConnector
A pipe friendly way to interact with an OMOP Common Data Model

HTML · 17 stars
IncidencePrevalence
Estimating incidence and prevalence with the OMOP CDM

R · 15 stars
CohortSurvival

R · 5 stars
DrugExposureDiagnostics
R package to inspect the drug exposure table in the OMOP CDM

R · 4 stars
CohortCharacteristics

R · 3 stars
PatientProfiles

R · 2 stars
visOmopResults

R · 1 star
DrugUtilisation

R · 1 star
omopgenerics

R · 0 stars

Open All

52 open issues indexed

addDaysQuery produces erroneous query for Redshift driver Open

darwin-eu/IncidencePrevalence#7 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Overlap of multiple observation periods - Error in `validateGeneratedCohortSet()` Open

darwin-eu/IncidencePrevalence#9 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Timestamps and estimateIncidence Open

darwin-eu/IncidencePrevalence#12 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Suggestion to Add Cumulative Incidence Row (Incidence Proportion) Open

darwin-eu/IncidencePrevalence#15 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Clarification for requirementsAtEntry description in generateTargetDenominatorCohortSet() function Open

darwin-eu/IncidencePrevalence#16 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
.options/style argument for tableIncidenceAttrition() and tablePrevalenceAttrition() Open

darwin-eu/IncidencePrevalence#17 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 15, 2026
Typo in IncidencePrevalence benchmarking Open

darwin-eu/IncidencePrevalence#18 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Adding additional methods to calculate confidence intervals Open

darwin-eu/IncidencePrevalence#19 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Does not take into account events outside of observation Open

darwin-eu/IncidencePrevalence#20 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
extra records in attrition Open

darwin-eu/IncidencePrevalence#21 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Why estimatePointPrevalence() does not have an option for selecting timepoint Open

darwin-eu/IncidencePrevalence#22 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
The order of age groups is not preserved Open

darwin-eu/IncidencePrevalence#23 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add option to export the results to Excel file Open

darwin-eu/IncidencePrevalence#24 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add option to calculate Incidence Proportion (cumulative incidence) Open

darwin-eu/IncidencePrevalence#25 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Type mismatch in generateDenominatorCohortSet() function Open

darwin-eu/IncidencePrevalence#27 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
To display the prevalence as percentage in tablePrevalence Open

darwin-eu/IncidencePrevalence#28 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Potential loss of follow-up when individuals transition between age bands in generateTargetDenominatorCohortSet() Open

darwin-eu/IncidencePrevalence#29 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Logs Bar chart labels overlap and become unreadable when they're long Open

darwin-eu/visOmopResults#25 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Running out of memory when calling `summariseCharacteristics()` Open

darwin-eu/CohortCharacteristics#6 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Adding percentage in attrition plots/tables Open

darwin-eu/CohortCharacteristics#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Suppress summary results from <5 people Open

darwin-eu/CohortCharacteristics#11 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
options for colour in plotComparedLargeScaleCharacteristics() restrictive Open

darwin-eu/CohortCharacteristics#13 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Attrition is ordered alphabetically in plots (diagram) Open

darwin-eu/CohortCharacteristics#16 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Units for tables Open

darwin-eu/CohortSurvival#5 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Refer to CohortConstructor in this vignette Open

darwin-eu/CohortSurvival#9 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 15, 2026
URGENT - Issues with the Survival Plot Open

darwin-eu/CohortSurvival#14 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
CohortSurvival suppressed results Open

darwin-eu/CohortSurvival#16 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Survival attrition results mislabel the target cohort name Open

darwin-eu/CohortSurvival#18 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
addition of stratitfication by drug_type_concept_id in the visualization of drug_quantities and probably drug_daily doses Open

darwin-eu/DrugExposureDiagnostics#12 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Filter by fixed combination of ingredients Open

enhancement

darwin-eu/CodelistGenerator#58 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
summariseCodeUse() Open

bug

darwin-eu/CodelistGenerator#222 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Horizontal relationship exploration Open

darwin-eu/CodelistGenerator#229 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
More information on vignettes regarding how searches are performed Open

darwin-eu/CodelistGenerator#239 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Vignette information on how to use codelistgenerator locally Open

darwin-eu/CodelistGenerator#240 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Exclude Argument in getCandidateCodes Excludes Partial Matches Instead of Exact Terms Open

darwin-eu/CodelistGenerator#241 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 15, 2026
getRouteCategories instead of getRoutes() in documentation Open

darwin-eu/CodelistGenerator#242 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
add combination of ingredients search in getDrugIngredients() Open

darwin-eu/CodelistGenerator#243 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Issue with getDrugIngredientCodes when drug name [ ¹⁸ F]AlF-NOTA-FAPI-04 is in concepts Open

darwin-eu/CodelistGenerator#247 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Feature Request: Add getCodelistFromConceptSet() function for direct database query of concept sets Open

darwin-eu/CodelistGenerator#248 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Issue using CodeListGenerator locally Open

darwin-eu/CodelistGenerator#249 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Update of getDrugIngredientCodes() documentation Open

darwin-eu/CodelistGenerator#251 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
error when argument countBy = "person" only for summariseCodeUse Open

darwin-eu/CodelistGenerator#255 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
How to add route information to cohort? Open

darwin-eu/DrugUtilisation#17 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Concept set and Cohort name carry duplicate information Open

darwin-eu/DrugUtilisation#22 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
arrange() does not work before using collect() Open

darwin-eu/CDMConnector#19 · 13 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Help offer: Adding BigQuery to unit tests Open

darwin-eu/CDMConnector#51 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Multi-part identifier leads to problems in MSSQL Open

darwin-eu/CDMConnector#52 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
How to add tables to the cdm object Open

darwin-eu/CDMConnector#53 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
cdmFromCon fails on Snowflake with glue ≥ 1.8: glue_sql: .con is absent but must be supplied Open

darwin-eu/CDMConnector#54 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Advice needed: how to include ATLAS cohort table OR self-generated cohort data the most flexible way Open

darwin-eu/CDMConnector#56 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026

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