Owner
daisybio
25 indexed repositories · View on GitHub
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drevalpy
DrEval is a toolkit that ensures drug response prediction evaluations are statistically sound, biologically meaningful, and reproducible.
Python · 44 stars
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data-leakage-ppi-prediction
Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'
C++ · 33 stars
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NEASE
A network-based approach for exon set enrichment
Python · 15 stars
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TF-Prioritizer
Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
Java · 14 stars
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SPONGE
Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference
R · 14 stars
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DIGGER
Exploring Isoform-specific interactions
Python · 13 stars
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epigen
EpiGEN: an epistasis simulation pipeline
Python · 12 stars
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ASimulatoR
ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142
R · 11 stars
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R · 11 stars
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PPI_prediction_study
Code associated with the paper 'Deep learning models for unbiased sequence-based PPI prediction plateau at an accuracy of 0.65'
Python · 11 stars
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Jupyter Notebook · 10 stars
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PRONE
R Package for preprocessing, normalizing, and analyzing proteomics data
R · 8 stars
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C++ · 7 stars
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keypathwayminer-R
R package for de novo pathway enrichment using KeyPathwayMiner
R · 5 stars
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HiTSeekR
An R shiny web application for the analysis of various types of high-throughput screening data
R · 5 stars
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cyanus
A Systematic Comparison of Differential Analysis Methods for CyTOF Data & CYANUS App
R · 5 stars
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R · 3 stars
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preprocess_drp_data
This project contains all steps necessary to get from the original data repositories of CCLE/GDSC/… to usable input files.
Jupyter Notebook · 3 stars
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PRONE.Shiny
Code of the R Shiny App of the PRONE R Package.
R · 2 stars
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mirtargetbenchmark
R package to benchmark sequence based target prediction tools
HTML · 1 star
- 5 more repositories live on View on GitHub
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enhancement
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enhancement
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Which UniFrac? Open
daisybio/namco#64 · 0 comments · 0 reactions · 0 assignees ·
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Load Balancing Openenhancement
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daisybio/namco#67 · 0 comments · 0 reactions · 0 assignees ·
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Include evolview Open
daisybio/namco#68 · 0 comments · 0 reactions · 0 assignees ·
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MIMOSA2 integration Openenhancement
daisybio/namco#69 · 0 comments · 0 reactions · 0 assignees ·
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daisybio/namco#70 · 0 comments · 0 reactions · 0 assignees ·
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daisybio/namco#71 · 0 comments · 0 reactions · 0 assignees ·
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question
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daisybio/namco#82 · 0 comments · 0 reactions · 0 assignees ·
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MS Tutorial Error Open
daisybio/NEASE#15 · 0 comments · 0 reactions · 0 assignees ·
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21.11 all tabs enhancement
daisybio/platlas#2 · 0 comments · 0 reactions · 1 assignee ·
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21.11 all tabs enhancement
daisybio/platlas#3 · 0 comments · 0 reactions · 1 assignee ·
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21.11 all tabs enhancement
daisybio/platlas#4 · 0 comments · 0 reactions · 1 assignee ·
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21.11 additions all tabs
daisybio/platlas#5 · 0 comments · 0 reactions · 1 assignee ·
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21.11 additions FE analysis
daisybio/platlas#7 · 0 comments · 0 reactions · 1 assignee ·
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delete patient 6 Open21.11 complete change
daisybio/platlas#9 · 0 comments · 0 reactions · 1 assignee ·
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update PCA plots Open
daisybio/platlas#16 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#18 · 0 comments · 0 reactions · 1 assignee ·
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insert CCS data FEA Open
daisybio/platlas#20 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#21 · 0 comments · 0 reactions · 1 assignee ·
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KPM script Open
daisybio/platlas#22 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#28 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#29 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#30 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#31 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#32 · 0 comments · 0 reactions · 1 assignee ·
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miRNA CCS einfügen Open
daisybio/platlas#33 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#34 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#35 · 0 comments · 0 reactions · 1 assignee ·
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FEA: Plots auf Seite aktualisieren: increased/ decreased categories & their terms and their genes Open
daisybio/platlas#36 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#37 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#38 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#39 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#40 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#41 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#42 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/platlas#43 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/Tangram_Refinement_Strategies#1 · 2 comments · 0 reactions · 0 assignees ·
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daisybio/preprocess_drp_data#3 · 0 comments · 1 reaction · 0 assignees ·
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daisybio/preprocess_drp_data#4 · 0 comments · 1 reaction · 0 assignees ·
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daisybio/PRONE#10 · 0 comments · 0 reactions · 0 assignees ·
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DE Lagging Open
daisybio/PRONE.Shiny#12 · 5 comments · 0 reactions · 0 assignees ·
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daisybio/PRONE.Shiny#15 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/PRONE.Shiny#16 · 0 comments · 0 reactions · 1 assignee ·
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daisybio/SPONGE#1 · 2 comments · 0 reactions · 0 assignees ·
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daisybio/SPONGE#6 · 0 comments · 0 reactions · 0 assignees ·
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daisybio/SPONGE#8 · 0 comments · 0 reactions · 0 assignees ·
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