daisybio / daisybio/preprocess_drp_data

Caution with BeatAML2

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Description

In the raw data, there is the column `normalized_viability`, which we treat as the response column. It ranges from 0 to 7703 (an outlier; the next value is 3743). In the original publication, the authors state the normalized viability is normalized to lie between 0 and 100. This is clearly not the case. However, there is also neither a positive nor a negative control, nor a raw response column, so there is really nothing we can do but normalize these values to lie between 0 and 1 with CurveCator.

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