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cytoscape
62 indexed repositories · View on GitHub
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cytoscape.js
Graph theory (network) library for visualisation and analysis
JavaScript · 11210 stars
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cytoscape
Cytoscape: an open source platform for network analysis and visualization
Shell · 728 stars
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cytoscape-tutorials
Collection of modular Cytoscape tutorials for online presentation using reveal.js
HTML · 336 stars
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ipycytoscape
A Cytoscape Jupyter widget
Python · 289 stars
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cytoscape.js-dagre
The Dagre layout for DAGs and trees for Cytoscape.js
JavaScript · 287 stars
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py2cytoscape
Python utilities for Cytoscape and Cytoscape.js
Python · 176 stars
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cytoscape.js-cose-bilkent
The CoSE layout for Cytoscape.js by Bilkent with enhanced compound node placement.
HTML · 137 stars
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cyjShiny
An R/shiny widget for cytoscape.js
JavaScript · 98 stars
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cytoscape-automation
Collection of scripts that include programmatic io and control of Cytoscape
HTML · 93 stars
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JavaScript · 88 stars
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py4cytoscape
Python library for calling Cytoscape Automation via CyREST
Python · 87 stars
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cytosnap
A Node.js package that renders images of Cytoscape.js graphs on the server using Puppeteer
JavaScript · 61 stars
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RCy3
New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
R · 60 stars
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cytoscape.js-qtip
A Cytoscape.js extension that wraps the QTip jQuery library
JavaScript · 42 stars
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cytoscape-jupyter-widget
Cytoscape.js based network visualizer for Jupyter Notebook
JavaScript · 37 stars
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cytoscape-web
A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven stylin...
TypeScript · 33 stars
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cyREST
Core App: REST API module for Cytoscape
JavaScript · 31 stars
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cy-jupyterlab
Jupyter lab widget for rendering graphs (networks)
Jupyter Notebook · 24 stars
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cytoscape-app-samples
Cytoscape 3 sample code for App developers.
Java · 23 stars
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appstore
Cytoscape App Store web application code
Python · 20 stars
- 42 more repositories live on View on GitHub
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auto-migrated Priority-Medium Type-Enhancement
cytoscape/foograph#1 · 0 comments · 0 reactions · 0 assignees ·
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auto-migrated Priority-Medium Type-Enhancement
cytoscape/foograph#2 · 0 comments · 0 reactions · 0 assignees ·
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auto-migrated Priority-Medium Type-Task
cytoscape/foograph#7 · 0 comments · 0 reactions · 0 assignees ·
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Edge arrows & loops Openauto-migrated Priority-Medium Type-Enhancement
cytoscape/foograph#8 · 0 comments · 0 reactions · 0 assignees ·
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auto-migrated Priority-Medium Type-Enhancement
cytoscape/foograph#9 · 0 comments · 0 reactions · 0 assignees ·
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auto-migrated Priority-Medium Type-Defect
cytoscape/foograph#12 · 0 comments · 0 reactions · 0 assignees ·
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auto-migrated Priority-Medium Type-Defect
cytoscape/foograph#13 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/wiki-plugin-cytodemo#2 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cytoscape.js-rpc#1 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cytoscape.js-rpc#2 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cytoscape.js-hierarchical#1 · 0 comments · 0 reactions · 0 assignees ·
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paper links Open
cytoscape/cytoscape.js-fisheye#1 · 0 comments · 0 reactions · 0 assignees ·
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implementation links Open
cytoscape/cytoscape.js-fisheye#3 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cytoscape.js-fisheye#4 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cytoscape.js-fisheye#5 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/jupyter-cytoscape#5 · 7 comments · 0 reactions · 0 assignees ·
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cytoscape/jupyter-cytoscape#7 · 2 comments · 0 reactions · 0 assignees ·
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cytoscape/jupyter-cytoscape#8 · 1 comment · 0 reactions · 0 assignees ·
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cytoscape/slush-cytoscape-extension#3 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/slush-cytoscape-extension#13 · 0 comments · 1 reaction · 0 assignees ·
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cytoscape/slush-cytoscape-extension#14 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/prefs#1 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cyjs-sample#1 · 0 comments · 0 reactions · 1 assignee ·
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cytoscape/cyjs-sample#4 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cy2_plugin_archive#1 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cytosnap#28 · 1 comment · 0 reactions · 0 assignees ·
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cytoscape/cytosnap#29 · 2 comments · 0 reactions · 0 assignees ·
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cytoscape/cytosnap#32 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/enhancer#1 · 0 comments · 0 reactions · 0 assignees ·
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Circos charts Open
cytoscape/enhancer#2 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/enhancer#3 · 0 comments · 0 reactions · 0 assignees ·
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How can data wrap Open
cytoscape/cytoscape.js-qtip#36 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/biopax#5 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cyChart#5 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cyChart#16 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cyChart#28 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/cyChart#29 · 0 comments · 0 reactions · 0 assignees ·
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bug
cytoscape/cyChart#30 · 0 comments · 0 reactions · 1 assignee ·
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cytoscape/cyChart#31 · 0 comments · 0 reactions · 0 assignees ·
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bug
cytoscape/cyChart#33 · 1 comment · 0 reactions · 2 assignees ·
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cytoscape/cyChart#34 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
cytoscape/py2cytoscape#2 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
cytoscape/py2cytoscape#3 · 0 comments · 0 reactions · 0 assignees ·
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cytoscape/py2cytoscape#4 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
cytoscape/py2cytoscape#5 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
cytoscape/py2cytoscape#10 · 1 comment · 0 reactions · 0 assignees ·
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graph-tool interface Openenhancement
cytoscape/py2cytoscape#20 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
cytoscape/py2cytoscape#21 · 0 comments · 0 reactions · 1 assignee ·
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cytoscape/py2cytoscape#26 · 1 comment · 0 reactions · 0 assignees ·
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igraph issue Open
cytoscape/py2cytoscape#35 · 0 comments · 0 reactions · 0 assignees ·