cytoscape/cyREST

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Core App: REST API module for Cytoscape

Stars: 31
Forks: 11
Open beginner issues: 0
Indexed issues: 50

Dominant language: JavaScript
License: MIT
Last GitHub push: Jul 31, 2025
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: help wanted
PR merge metrics: No merged PRs in 30d

Open All

50 open issues indexed

Unexplained Long Execution Warning Open

bug

cytoscape/cyREST#1 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Re-organize Swagger API Tags Open

feature request

cytoscape/cyREST#4 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Make Cytoscape Log a RESTful endpoint Open

feature request new API

cytoscape/cyREST#5 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add support for Cytoscape Filters Open

feature request new API

cytoscape/cyREST#7 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add resource for functions in the Cytoscape Tool Panel Open

feature request new API

cytoscape/cyREST#8 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Control parameters of Edge Bundling Open

feature request new API

cytoscape/cyREST#10 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Export Style Legends Open

feature request

cytoscape/cyREST#12 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Export to Cytoscape.js app (zip with full webapp) Open

feature request

cytoscape/cyREST#14 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Layout Settings Open

feature request

cytoscape/cyREST#17 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Return CYS file Open

feature request

cytoscape/cyREST#21 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Filter for Visual Properties Open

feature request

cytoscape/cyREST#23 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Resources for Image Manager Open

feature request new API

cytoscape/cyREST#29 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Better Handling of Node image files Open

feature request

cytoscape/cyREST#30 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Unfork repo Open

feature request

cytoscape/cyREST#35 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Make command JSON result available via POST and GET when an HTTP header specifies JSON returns Open

feature request

cytoscape/cyREST#38 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Visual Properties outputs are inconsistent Open

bug

cytoscape/cyREST#39 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Update Swagger UI Open

feature request

cytoscape/cyREST#42 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Improve LOD endpoint Open

feature request

cytoscape/cyREST#48 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Figure out how to pass Do Not Track HTTP header to services Open

feature request

cytoscape/cyREST#59 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Convenience methods for getting/setting layout coordinates Open

feature request new API

cytoscape/cyREST#60 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add support for CSV/TSV loading Open

feature request new API

cytoscape/cyREST#62 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Expand Network Import format Open

feature request

cytoscape/cyREST#64 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add support for more network clone types Open

feature request

cytoscape/cyREST#65 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add operations to cover table import from file Open

feature request

cytoscape/cyREST#66 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Import/Export Styles Open

feature request

cytoscape/cyREST#67 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Expand image export options Open

cytoscape/cyREST#68 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Export Tables Open

cytoscape/cyREST#69 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add 'Fit Selected' Open

cytoscape/cyREST#70 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add zoom support Open

cytoscape/cyREST#71 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Moving away from reliance on Cytoscape selection Open

help wanted

cytoscape/cyREST#73 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Undo/Redo support Open

feature request

cytoscape/cyREST#76 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Cut/Copy/Paste support Open

cytoscape/cyREST#77 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
JSON Support for Commands Open

cytoscape/cyREST#78 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Layout via REST API doesn't include 'layout selected' options. Open

bug

cytoscape/cyREST#81 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add https support Open

cytoscape/cyREST#83 · 13 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Decide on a PATCH endpoint message format Open

cytoscape/cyREST#88 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Better handling of existing Cytoscapes versions Open

cytoscape/cyREST#89 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Better handling of other instances of Cytoscape Open

cytoscape/cyREST#90 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add method for clearing all edge bends Open

feature request

cytoscape/cyREST#92 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add DELETE /v1/networks/{networkId}/views/{viewId}/{objectType}/{visualProperty}/bypass Open

feature request

cytoscape/cyREST#93 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Support for JSON "Infinity" values for double and integers Open

bug feature request

cytoscape/cyREST#99 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Incomplete results for Get Layout Parameters Open

bug

cytoscape/cyREST#100 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Broken link in swagger documentation Open

broken

cytoscape/cyREST#101 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
CyREST starts very slowly on Windows machines Open

cytoscape/cyREST#102 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Give updating users a 'Restart Now' option Open

cytoscape/cyREST#103 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
HTTPS to 127.0.0.1 communication fails on Firefox Open

cytoscape/cyREST#104 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Pause needed after network creation Open

bug

cytoscape/cyREST#106 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
getAllTables return is way too big Open

feature request

cytoscape/cyREST#107 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
How to set collection names Open

feature request question

cytoscape/cyREST#108 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Network Analyzer Fails with JSONDecodeError if network name contains escape Open

cytoscape/cyREST#114 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

cytoscape/cyREST

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