common-workflow-language

common-workflow-language/schema_salad

Semantic Annotations for Linked Avro Data

Stars: 86
Forks: 64
Open beginner issues: 0
Indexed issues: 79
Avg merge: 19h 24m
Merged PRs (30d): 19

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 9, 2026
Latest indexed: Sep 15, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: help wanted

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79 open issues indexed

Consider using some other system for doc generation Open

common-workflow-language/schema_salad#4 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Unable to compile schema using avro-tools Open

common-workflow-language/schema_salad#7 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
improve test code coverage Open

common-workflow-language/schema_salad#10 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
get our typeshed merged upstream and in the next mypy release Open

common-workflow-language/schema_salad#23 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Generate a UML model from a schema_salad schema Open

common-workflow-language/schema_salad#24 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
subclassed Classes need a better description Open

common-workflow-language/schema_salad#35 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
teach schema salad about expressions Open

common-workflow-language/schema_salad#39 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 15, 2026
Support scopedRef on docParent &c Open

common-workflow-language/schema_salad#43 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
study lockfile package deprecation situation Open

common-workflow-language/schema_salad#95 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add a possibility to specify default values for fields in schema salad Open

enhancement help wanted

common-workflow-language/schema_salad#124 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Should not be allowed to resolve file: URIs from http/http Open

enhancement

common-workflow-language/schema_salad#130 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Spaces etc in enums not escaped in RDF Open

bug help wanted

common-workflow-language/schema_salad#132 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 15, 2026
Add support for hypothes.is to the schema_salad.makedoc for crowdsourced annotations Open

common-workflow-language/schema_salad#148 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
skip_schemas is missing unit testing Open

bug help wanted

common-workflow-language/schema_salad#155 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Bump to v1.1-dev1 Open

common-workflow-language/schema_salad#166 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Roundtrip (load/save) failures Open

common-workflow-language/schema_salad#187 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
CI failed: Inconsistent definition from schema_salad Open

common-workflow-language/schema_salad#356 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
add automated test for breaking the API Open

common-workflow-language/schema_salad#219 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Weird type value in CWL specification documentation Open

common-workflow-language/schema_salad#235 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
makedoc should include jsonldPredicate details Open

common-workflow-language/schema_salad#246 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Optional array of enums crashes when a value is set Open

common-workflow-language/schema_salad#248 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
document yaml quirks Open

common-workflow-language/schema_salad#249 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
RFE: fetch directly JSON from HDF5 files? Open

common-workflow-language/schema_salad#250 · 8 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
feature request: convert a CWL "inputs" section to a schema-salad definition Open

common-workflow-language/schema_salad#276 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
feature request: `--print-avro` should resolve `extends` references Open

common-workflow-language/schema_salad#278 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Improve Java Code Generation Open

common-workflow-language/schema_salad#303 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
question: linking different AVRO schemas with OWL/RDFS ontologies Open

common-workflow-language/schema_salad#323 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Warnings does not support `--print-oneline` Open

common-workflow-language/schema_salad#328 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
API for bundling schemas Open

common-workflow-language/schema_salad#335 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
codegen support for schema-salad 1.1 Open

common-workflow-language/schema_salad#349 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
codegen: CWL v1.x: workflow step "out" fields fail to parse if in long form Open

common-workflow-language/schema_salad#359 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Can the parsers avoid building full URLs Open

common-workflow-language/schema_salad#367 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
It is not clear the relationship between (section 4, 5, 6) and other sections Open

common-workflow-language/schema_salad#388 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
There are no descriptions how to handle `jsonldPredicate` with a string except for `@id` Open

common-workflow-language/schema_salad#389 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
publish about schema_salad in JOSS Open

common-workflow-language/schema_salad#390 · 4 comments · 4 reactions · 1 assignee · Indexed Sep 15, 2026
Missing links: "Semantic Annotations" and `Schema` section Open

common-workflow-language/schema_salad#395 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
`--print-pre` inserts an identifier field of other unused type Open

common-workflow-language/schema_salad#397 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 15, 2026
schema-salad-tool HTML generation Open

common-workflow-language/schema_salad#405 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Feature Request] Support new JSON-LD-star draft Open

common-workflow-language/schema_salad#416 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
schema-salad-docs: targets for individual `Field`s Open

common-workflow-language/schema_salad#436 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
need test for "check_exists does not follow redirects" Open

common-workflow-language/schema_salad#451 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
In some scenarios `fetch_text` returns empty string Open

common-workflow-language/schema_salad#465 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
It is not clear the relationship between Salad documents and document contexts Open

common-workflow-language/schema_salad#483 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[TypeScript Codegen] Remove undefined type from optional types Open

common-workflow-language/schema_salad#488 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Codegen] Remove redundancies in interfaces generated by the Java and TypeScript codegens Open

common-workflow-language/schema_salad#489 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Python codegen] Error validating CWL v1.2.1_proposed conformance test 139 after loading and saving Open

bug

common-workflow-language/schema_salad#491 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
`$base` is ignored in `$include` directive Open

common-workflow-language/schema_salad#495 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
There are no descriptions of how to behave in the case of `"_id": "@type"` Open

common-workflow-language/schema_salad#498 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Codegen] Documentation strings contain wrong links Open

common-workflow-language/schema_salad#501 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
metaschema predicates pollute salad document namespace Open

common-workflow-language/schema_salad#506 · 8 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

A short digest of beginner-friendly GitHub issues.