cfe-lab/CFEIntact

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A bioinformatics tool for detecting defects in HIV-1 proviral sequences.

Stars: 5
Forks: 4
Open beginner issues: 0
Indexed issues: 9
Avg merge: 10h 7m
Merged PRs (30d): 5

Dominant language: Python
License: MIT
Last GitHub push: Sep 10, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue

Beginner friendly Everything

Open All

9 open issues indexed

Base ORF detection on isoforms Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

cfe-lab/CFEIntact#101 · 1 comment · Opened May 29, 2026
Feature Request: Option to use a custom FASTA file as the alignment reference (e.g., for lab strains like NL4-3) Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 45/100

cfe-lab/CFEIntact#100 · 4 comments · Opened May 26, 2026
Report reverse-complement alignments Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cfe-lab/CFEIntact#42 · Opened May 16, 2025
Improve typing in source code Open

dependencies enhancement good first issue python

Difficulty 5/5 Over a week Newbie friendliness 25/100

cfe-lab/CFEIntact#33 · Opened Feb 3, 2025
Display more regions in `regions.csv` Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 42/100

cfe-lab/CFEIntact#25 · Opened Jul 29, 2024
Add type annotations to Biopython code Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cfe-lab/CFEIntact#23 · 1 comment · Opened Jul 26, 2024
Improve ORF coordinates detection Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 48/100

cfe-lab/CFEIntact#22 · 2 comments · Opened Jul 25, 2024
Present output in a quality-control manner Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

cfe-lab/CFEIntact#20 · Opened May 29, 2024
Add concordance output statistics Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

cfe-lab/CFEIntact#7 · Opened Oct 3, 2023

cfe-lab/CFEIntact

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