cfe-lab / cfe-lab/CFEIntact

Add concordance output statistics

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enhancement
Dominant language
Python
Stars
5
Forks
4
Avg merge
10h 7m
Merged PRs (30d)
5

Description

This should provide an overview on how well different regions, and perhaps the whole sequence, align to the subtype sequence.

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

No files, tests, or entry points are named. First clarify which regions and subtype sequence should be compared and which concordance statistics and output format are required; done means the tool reports an agreed overview for both individual regions and, if requested, the whole sequence.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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