aolabNeuro

optitrack metadata breaks when there are commas in any of the keys or values Open

bug

aolabNeuro/analyze#45 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

transfer old code Open

enhancement

aolabNeuro/analyze#49 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026

no task in certain bmi3d experiments Open

bug

aolabNeuro/analyze#59 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026

add voltsperbit and channel ids to ecube metadata Open

enhancement high priority

aolabNeuro/analyze#60 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

add tight layout before/during savefig Open

question

aolabNeuro/analyze#63 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

make a function to get default colors for a given number of items (channels, units maybe) Open

enhancement

aolabNeuro/analyze#67 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 13, 2026

add kalman filter code Open

enhancement

aolabNeuro/analyze#86 · 3 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026

add functions to get specific analog or digital data given a block number Open

enhancement

aolabNeuro/analyze#115 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

function to center color limits on zero Open

enhancement

aolabNeuro/analyze#118 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

Link functions to their usage in example .ipynb notebooks Open

documentation enhancement

aolabNeuro/analyze#139 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

add kalman filter example jupyter notebook Open

enhancement

aolabNeuro/analyze#144 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026

problems with postproc.get_trial_targets() Open

invalid

aolabNeuro/analyze#165 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

visualize 3D target positions and trajectories Open

enhancement

aolabNeuro/analyze#166 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

Errors in test_visualization animation functions Open

aolabNeuro/analyze#172 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

save_hdf does not announce unsaved variables failing dtype checks Open

bug high priority

aolabNeuro/analyze#177 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

Add conversion from timestamps to timeseries to preproc.prepare_bmi3d Open

enhancement

aolabNeuro/analyze#186 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

add saving the xml data including voltsperbit to `aopy.utils.save_test_signal_ecube()` Open

enhancement

aolabNeuro/analyze#192 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

include paramter for which ecube headstage to load Open

question

aolabNeuro/analyze#193 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026

add an option to load ecube data in volts by multiplying out the voltageperbits Open

enhancement

aolabNeuro/analyze#194 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

some ecube data loading functions don't have a separate data_dir Open

invalid

aolabNeuro/analyze#195 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

make an example notebooks showing how to call animations Open

aolabNeuro/analyze#197 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 13, 2026

exp_data['clock']['timestamp'] has repeated clock values Open

documentation invalid

aolabNeuro/analyze#198 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

Add units to BMI3D metadata Open

enhancement

aolabNeuro/analyze#200 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

list aopy to pip repos/conflicting pip package name aopy Open

aolabNeuro/analyze#204 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

butterworth filter function only works with bandpass Open

bug high priority

aolabNeuro/analyze#208 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026

map_data2elec only works for 2 dim data Open

enhancement good first issue

aolabNeuro/analyze#211 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

convert_analog_to_digital() bug? Open

bug

aolabNeuro/analyze#229 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

get_trial_segments() generating nans? Open

documentation

aolabNeuro/analyze#234 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026

load_hdf_group incompatible with hdf datasets Open

bug

aolabNeuro/analyze#254 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

visualization.plot_tuning_curves error if ax is not none Open

bug

aolabNeuro/analyze#262 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026

add correlation calculations Open

enhancement

aolabNeuro/analyze#269 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026

change inputs to multitaper_lfp_bandpower() Open

enhancement

aolabNeuro/analyze#270 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

timestamps2trials Open

enhancement

aolabNeuro/analyze#271 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

electrode position filtering Open

enhancement high priority

aolabNeuro/analyze#272 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026

coherence calculations Open

enhancement

aolabNeuro/analyze#274 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

documentation images should be auto-generated Open

documentation invalid

aolabNeuro/analyze#286 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

make a function to get cursor bounds for a given experiment Open

enhancement

aolabNeuro/analyze#287 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

edge artifacts in lfp filtering Open

invalid preprocessing

aolabNeuro/analyze#291 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

metadata load error in `.data.load_ecube_digital` Open

aolabNeuro/analyze#293 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026

documentation cleanup Open

documentation

aolabNeuro/analyze#296 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026

calc_max_erp() should use nanmean() instead of mean() to average across trials Open

bug high priority

aolabNeuro/analyze#299 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

reorganize modules and add submodules Open

enhancement

aolabNeuro/analyze#309 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

channel mapping grid pos Open

enhancement

aolabNeuro/analyze#341 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026

precondition.downsample() Open

enhancement preprocessing

aolabNeuro/analyze#364 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

analysis.fit_linear_regression doesn't work with 1d arrays Open

bug

aolabNeuro/analyze#377 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

trial_align_times returns different number of data points at each trial Open

aolabNeuro/analyze#379 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 13, 2026

cryptic error message for plot_tfr Open

documentation

aolabNeuro/analyze#383 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026

get_next_filename Open

enhancement

aolabNeuro/analyze#396 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 13, 2026

get_implant_date() Open

enhancement

aolabNeuro/analyze#397 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026

load bmi3d center_out task codes function Open

enhancement

aolabNeuro/analyze#412 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 13, 2026

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