Conda-install-error
- Dominant language
- D
- Stars
- 52
- Forks
- 6
- PR merge metrics
- No merged PRs in 30d
Description
when I run "snakemake --configfile=snakemake.yml --use-conda" or "snakemake --configfile=snakemake.yml --use-conda --profile=slurm"
it told me that "SyntaxError in line 920 of /public/home/GL_lixn/biosoft/dentist.v3.0.0.x86_64/Snakefile:
Unexpected keyword container in rule definition (Snakefile, line 920)"
Contributor guide
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Research direction
The error points to line 920 in the Snakefile where an unexpected keyword 'container' is used in a rule definition. First, examine the Snakefile around that line to understand the rule syntax and the invalid keyword. Check the Snakemake documentation for correct rule definitions and the --use-conda flag usage. Then, test running the command locally to reproduce the error and verify the fix.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, build-system
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100