a-ludi / a-ludi/dentist

Conda-install-error

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#34 9 comments 0 reactions 0 assignees View on GitHub
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Description

when I run "snakemake --configfile=snakemake.yml --use-conda" or "snakemake --configfile=snakemake.yml --use-conda --profile=slurm"
it told me that "SyntaxError in line 920 of /public/home/GL_lixn/biosoft/dentist.v3.0.0.x86_64/Snakefile:
Unexpected keyword container in rule definition (Snakefile, line 920)"

Contributor guide

No contributing guide indexed for this repository

Research direction

The error points to line 920 in the Snakefile where an unexpected keyword 'container' is used in a rule definition. First, examine the Snakefile around that line to understand the rule syntax and the invalid keyword. Check the Snakemake documentation for correct rule definitions and the --use-conda flag usage. Then, test running the command locally to reproduce the error and verify the fix.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics, build-system
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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