Owner

VH-Lab

11 indexed repositories · View on GitHub

NDI-matlab
NDI (Neuroscience Data Interface) is a cross-platform interface standard for reading neuroscience data and storing the results of analyses

HTML · 15 stars
vhlab-toolbox-matlab
General purpose Matlab toolbox for neuroscience research created by Van Hooser lab and collaborators

MATLAB · 12 stars
NDR-matlab
Neuroscience Data Readers - A Matlab conglomerative library for reading neuroscience data files

MATLAB · 2 stars
NDIcalc-vis-matlab
NDI calculator objects and documents for vision research

MATLAB · 1 star
DID-matlab
Data Interface Database

MATLAB · 1 star
vhlab-library-matlab
VH Lab Matlab libraries; functions that manage and analyze VH lab experiments that are a less general than vhlab-toolbox-matlab

MATLAB · 0 stars
vhlab-NewStim-python
Python data readers for the vhlab-NewStim-matlab class

Python · 0 stars
vhlab-library-python
A python conversion of vhlab-library-matlab

Python · 0 stars
Pyraview
Routines for generating different views of data series (e.g., 1:100, 1:1000, 1:10000 views, etc)

MATLAB · 0 stars
vhlab-grading-matlab
Small programs / apps for grading

MATLAB · 0 stars
DID-python
DID database implementation in python

Python · 0 stars

Beginner friendly Everything

Open All

Deprecate `ndi.app.oridirtuning` in favor of `ndi.calc.vis.oridir_tuning` Open

Difficulty 3/5 1-2 days Newbie friendliness 74/100

VH-Lab/NDI-matlab#1001 · Opened Sep 20, 2026
extract_docs_files: staged file-series member copies (and the temp dir) leak on success in copy mode Open

Difficulty 3/5 1-2 days Newbie friendliness 72/100

VH-Lab/NDI-matlab#1000 · Opened Sep 19, 2026
Make ndi.common.PathConstants.TempFolder configurable at runtime Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

VH-Lab/NDI-matlab#999 · Opened Sep 19, 2026
Design: speed_tuning_bootstrap calculator (bootstrap CIs on the spatiotemporal coupling index) Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

VH-Lab/NDIcalc-vis-matlab#108 · 1 comment · Opened Sep 18, 2026
Remove dead `stimloopsplitter_calc` schema from main Open

Difficulty 1/5 Under an hour Newbie friendliness 94/100

VH-Lab/NDIcalc-vis-matlab#107 · Opened Sep 17, 2026
did.document should mint the shape it was asked for, not always V_delta canonical (V2) Open

design V2

Difficulty 5/5 Over a week Newbie friendliness 45/100

VH-Lab/DID-matlab#204 · Opened Sep 16, 2026
File readers and GUIs should handle glacier-storage data gracefully (not just "file not found") Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

VH-Lab/NDI-matlab#996 · Opened Sep 16, 2026
GUI for managing document storage tiers (glacier ↔ standard) Open

Difficulty 4/5 3-5 days Newbie friendliness 55/100

VH-Lab/NDI-matlab#995 · Opened Sep 16, 2026
Feature: Allow the light sheet ingestion to proceed directly into the cloud Open

enhancement

VH-Lab/NDI-matlab#983 · 1 assignee · Opened Sep 12, 2026
Export a bin1-only .gef (and .h5ad) back out of the documents Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

VH-Lab/NDI-matlab#980 · Opened Sep 9, 2026
Multipart upload: single-file uploads are capped at 5 GB and fail late Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

VH-Lab/NDI-matlab#978 · Opened Sep 9, 2026
`ndi.element` should reject whitespace in `name` and `type` Open

Difficulty 3/5 1-2 days Newbie friendliness 75/100

VH-Lab/NDI-matlab#976 · Opened Sep 8, 2026
minor `syncTriggerTrains`: the seed for a candidate offset is anchored at pulse 1, not at the fingerprint that produced it Open

Difficulty 3/5 1-2 days Newbie friendliness 72/100

VH-Lab/NDI-matlab#975 · Opened Sep 8, 2026
Suggestion: rename the customFileHandler context mode 'add' to 'ingest' Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

VH-Lab/DID-matlab#195 · Opened Sep 8, 2026
Does updateObjectTypeMarker miss a dataset whose session_in_a_dataset belongs to another session? Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

VH-Lab/NDI-matlab#974 · Opened Sep 8, 2026
Note: the ndi-documents signed-url-set JOB route has never been called against a live server Open

Difficulty 2/5 1-3 hours Newbie friendliness 78/100

VH-Lab/NDI-matlab#971 · Opened Sep 7, 2026
Refactor spatialGeneExpressionTiles onto DID file series (and number members from 1) Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

VH-Lab/NDI-matlab#938 · Opened Sep 6, 2026
Optional ingest-time gating for untrusted document sources Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

VH-Lab/DID-python#63 · Opened Sep 4, 2026
Optional ingest-time gating for untrusted document sources Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

VH-Lab/DID-matlab#172 · Opened Sep 4, 2026
[Optional — design suggestion, not a bug] Folder scan merges every `*_L*.bin` in a directory into one dataset Open

enhancement optional question

Difficulty 5/5 Over a week Newbie friendliness 35/100

VH-Lab/Pyraview#29 · Opened Sep 3, 2026
What vhlab-library-python and NDI-python actually need from here: five calls, and a .mat object reader under them Open

Difficulty 5/5 Over a week Newbie friendliness 45/100

VH-Lab/vhlab-NewStim-python#3 · Opened Sep 2, 2026
Question: should the presentation half be rebuilt on PsychoPy, in a separate repository? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

VH-Lab/vhlab-NewStim-python#2 · Opened Sep 2, 2026
Two scope decisions left over from #6: the OldSpikeImporters lineage, and who builds the Python NewStim Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

VH-Lab/vhlab-library-python#9 · Opened Sep 2, 2026
Add CI, and the MATLAB half of the symmetry tests against vhlab-library-python Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

VH-Lab/vhlab-library-matlab#8 · Opened Sep 2, 2026
Add CI, and symmetry tests that check the port against vhlab-library-matlab Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

VH-Lab/vhlab-library-python#7 · Opened Sep 2, 2026
Add reader-level symmetry coverage for SpikeGadgets Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

VH-Lab/NDR-matlab#123 · Opened Aug 28, 2026
ExtracellularInfoTest/testReturnsImportedNeurons fails (verification) in the No-Cloud test suite Open

VH-Lab/NDI-matlab#878 · 1 assignee · Opened Aug 18, 2026
Add a deterministic close()/delete() to the SQLite database object (root-cause for #870) Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

VH-Lab/NDI-matlab#873 · 1 comment · Opened Aug 13, 2026
[Note / no action required] What it would take to move away from MATLAB datenums for timebases/timestamps Open

documentation wontfix

Difficulty 5/5 Over a week Newbie friendliness 15/100

VH-Lab/DID-matlab#147 · Opened Jun 14, 2026
Add imageseries acquisition/ingest/read machinery to NDI 1 (image daq.system + daq.reader + element/probe) Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

VH-Lab/NDI-matlab#823 · Opened Jun 10, 2026
Batched multi-neuron spike-time reads for a single epoch (avoid per-element readtimeseries Open

VH-Lab/NDI-matlab#822 · 1 assignee · Opened Jun 5, 2026
Add an optional array of external programs to the `app` document (provenance for external import pipelines) Open

Difficulty 4/5 3-5 days Newbie friendliness 52/100

VH-Lab/NDI-matlab#820 · Opened Jun 5, 2026
[did2 #16] Pre-release checklist: V_delta → V2 rename, test audit, real-work exploration Open

Difficulty 5/5 Over a week Newbie friendliness 32/100

VH-Lab/NDI-matlab#804 · Opened May 25, 2026
[ndi-cloud-node] e2e tests for the dataset write-lock API (follow-up to #784) Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

VH-Lab/NDI-matlab#794 · Opened May 19, 2026
[did2 #774c] Deprecate src/ndi/ndi_common/schema_documents/ in favor of the DID-schema loader Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

VH-Lab/NDI-matlab#789 · Opened May 19, 2026
[did2 #15] Release notes, deprecation timeline, version bump Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

VH-Lab/NDI-matlab#788 · Opened May 19, 2026
[did2 #14] Migration guide (user-facing docs) Open

Difficulty 3/5 1-2 days Newbie friendliness 64/100

VH-Lab/NDI-matlab#787 · Opened May 19, 2026
[did2 #13] Cross-version cloud test: old NDI + new NDI on the same dataset Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

VH-Lab/NDI-matlab#786 · Opened May 19, 2026
[did2 #12] Corpus end-to-end tests for the migration path Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

VH-Lab/NDI-matlab#785 · Opened May 19, 2026
[did2 #11] [ndi-cloud-node] Dataset writeLock: exclusive write lease + 423 rejection Open

Difficulty 5/5 Over a week Newbie friendliness 48/100

VH-Lab/NDI-matlab#784 · Opened May 19, 2026
[did2 #9] ndi.migrate.local: migrate a local dataset/session to V_delta Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

VH-Lab/NDI-matlab#782 · Opened May 19, 2026
metadata editor - open minds has changed dataset fields, author no longer there, instead contribution, and contributorAffiliation Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

VH-Lab/NDI-matlab#768 · Opened May 4, 2026
check openMinds 5.0 -- some instance names have changed (the leading url) Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

VH-Lab/NDI-matlab#767 · Opened May 4, 2026
Update calc docs so it finds document superclasses correctly Open

VH-Lab/NDI-matlab#722 · 1 assignee · Opened Mar 24, 2026
ndi.cloud.internal.getCloudDatasetIdForLocalDataset should be easier to find Open

VH-Lab/NDI-matlab#633 · 1 assignee · Opened Jan 21, 2026
add a delete session and delete dataset method Open

VH-Lab/NDI-matlab#630 · 1 assignee · Opened Jan 21, 2026
epochProbeMapMaker - needs to have epoch Group number instead of rowname Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

VH-Lab/NDI-matlab#437 · Opened Aug 29, 2025
ndi.ontology.clearCache not clearing oboDataCache Open

VH-Lab/NDI-matlab#425 · 1 assignee · Opened Jul 28, 2025
Many methods of abstract `did.database` implements specific SQL behavior Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

VH-Lab/DID-matlab#108 · Opened Jul 4, 2025
Need clarification for return value of did.database/run_sql_query Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

VH-Lab/DID-matlab#107 · 1 comment · Opened Jul 4, 2025

Showing the newest 100

This page lists what was indexed most recently. Advanced filter has the whole inventory, narrowed by language, difficulty and how long a task takes.

Open advanced filter

VH-Lab

Showing the newest 100

Get new issues in your inbox