UCL/TLOmodel

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Epidemiology modelling framework for the Thanzi la Onse project

Stars: 35
Forks: 17
Open beginner issues: 0
Indexed issues: 75

Dominant language: Python
License: MIT
Last GitHub push: Aug 15, 2026
Latest indexed: Sep 20, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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75 open issues indexed

Creating Utility Function for Making Map Plots Open

enhancement

UCL/TLOmodel#1887 · 1 assignee · Opened Sep 9, 2026
Inconsistent handling of FirstGenericAppointment in Malaria and COPD modules Open

UCL/TLOmodel#1886 · 1 assignee · Opened Sep 7, 2026
Impact Of Antenatal Syphilis Screening And Treatment On Congenital Syphilis Outcomes (Stillbirth) Open

epi

UCL/TLOmodel#1884 · 2 assignees · Opened Sep 1, 2026
Proliferation of outputs in HealthBurden (and other core modules) Open

future-dev wontfix

Difficulty 5/5 Over a week Newbie friendliness 38/100

UCL/TLOmodel#1883 · Opened Aug 15, 2026
Suggested Readme improvements Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

UCL/TLOmodel#1882 · Opened Aug 7, 2026
pregnancy loss does not contribute to "population health" Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

UCL/TLOmodel#1881 · Opened Aug 6, 2026
clinics configuration is not updated if specified via parameters Open

UCL/TLOmodel#1875 · 1 assignee · Opened Jul 1, 2026
Refresh Website `tlomodel.org` and make a Low-Code solution for updating Open

website

UCL/TLOmodel#1874 · 1 assignee · Opened Jul 1, 2026
Handling of scaling_factor with suspend/resume functionality Open

UCL/TLOmodel#1873 · 1 assignee · Opened Jul 1, 2026
Log DALYS and Deaths by district in HealthBurden Logger Open

UCL/TLOmodel#1872 · 1 comment · 1 assignee · Opened Jul 1, 2026
create_pickles_locally throws an error Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

UCL/TLOmodel#1868 · Opened Jun 26, 2026
Rename Malaria_Treatment to avoid nesting it with Malaria_Treatment_Complicated Open

UCL/TLOmodel#1857 · 1 comment · 1 assignee · Opened Apr 21, 2026
Add individuals to `contributors.yaml` Open

website

UCL/TLOmodel#1850 · 4 assignees · Opened Mar 26, 2026
New logging format for `number_of_hcw_staff` has broken `estimate_input_cost_of_scenarios` Open

UCL/TLOmodel#1839 · 4 comments · 1 assignee · Opened Mar 5, 2026
Allow get_multiplier to accept a scaling factor Open

UCL/TLOmodel#1834 · 2 reactions · 1 assignee · Opened Feb 24, 2026
Allow `extract_results` to specify the draw/run as an argument Open

UCL/TLOmodel#1831 · 1 assignee · Opened Feb 24, 2026
Optimise `predict_healthcareseeking` in `HealthSeekingBehaviour` Open

performance

UCL/TLOmodel#1821 · 1 reaction · 1 assignee · Opened Feb 13, 2026
`warnings` in epi modules should be replaced to use `logger.warning` Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 42/100

UCL/TLOmodel#1818 · Opened Feb 10, 2026
Split up long-running tests to reduce serial running time Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

UCL/TLOmodel#1800 · 2 comments · Opened Feb 4, 2026
Skip suspended simulations files when downloading using `tlo batch-download` Open

UCL/TLOmodel#1780 · 1 comment · 1 assignee · Opened Jan 15, 2026
Apparent inconsistency in HSI_CardioMetabolicDisorders_Refill_Medication Open

UCL/TLOmodel#1748 · 3 comments · 1 assignee · Opened Nov 13, 2025
Nurse Shortages Open

UCL/TLOmodel#1747 · 3 assignees · Opened Nov 13, 2025
Possible additions to the costing module Open

health-econ

UCL/TLOmodel#1645 · 1 assignee · Opened Jul 8, 2025
Update project license configuration in `pyproject` Open

warning

UCL/TLOmodel#1644 · 1 assignee · Opened Jul 7, 2025
Use wildcards to indicate sets of TREATMENT_IDS when over-riding consumables. Open

epi

UCL/TLOmodel#1642 · 1 comment · 1 assignee · Opened Jul 4, 2025
Use of Xpert consumable is not correctly logged Open

UCL/TLOmodel#1602 · 5 comments · 2 assignees · Opened Mar 4, 2025
Incorrect format for module name in on_birth of HIV when determining probability of HIV tests for newborns (hiv.py line 1259) Open

UCL/TLOmodel#1600 · 4 comments · 2 assignees · Opened Feb 26, 2025
Effects of integrating diabetic retinopathy into the wider health system Open

epi module

UCL/TLOmodel#1595 · 2 assignees · Opened Feb 24, 2025
Rare failing assert in RTI line 3290 Open

bug

UCL/TLOmodel#1582 · 1 comment · 1 assignee · Opened Jan 29, 2025
Intermittent failures in `test_continuous_and_interrupted_simulations_equal` Open

bug

UCL/TLOmodel#1560 · 11 comments · 1 assignee · Opened Dec 20, 2024
Use online viewer for CSV resource files instead of rendering tables Open

documentation website

UCL/TLOmodel#1526 · 1 assignee · Opened Nov 22, 2024
One test failing in test_utils.py when running pytest tests Open

bug

UCL/TLOmodel#1521 · 3 comments · 1 assignee · Opened Nov 20, 2024
Disease modules schedule events for specific years during "burn-in period" at initialisation Open

framework

UCL/TLOmodel#1469 · 1 comment · 1 assignee · Opened Oct 3, 2024
Development of cohort model for maternal/newborn health analysis Open

epi framework

UCL/TLOmodel#1462 · 4 comments · 2 assignees · Opened Sep 12, 2024
overwriting categorical type parameters in analysis script not working as expected Open

bug framework

UCL/TLOmodel#1442 · 1 assignee · Opened Jul 29, 2024
Warning generated about logged columns Open

framework

UCL/TLOmodel#1440 · 1 comment · 1 assignee · Opened Jul 29, 2024
`bladder_cancer` polling runs at wrong frequency? Open

bug epi question

UCL/TLOmodel#1427 · 1 comment · 1 assignee · Opened Jul 17, 2024
Reduce Sphinx noise in generated docs Open

documentation website

UCL/TLOmodel#1394 · 1 assignee · Opened Jun 3, 2024
Inform users that some ResourceFiles (those for the HealthSystem) should not be edited directly. Open

framework

UCL/TLOmodel#1385 · 2 comments · 3 assignees · Opened May 30, 2024
Multiple outstanding 'todo's in `BladderCancer.py` can now be resolved Open

epi good-for-new-starter

UCL/TLOmodel#1381 · 1 assignee · Opened May 30, 2024
Remove src/test Open

framework

UCL/TLOmodel#1376 · 1 assignee · Opened May 28, 2024
Epilepsy: Should it include intravenous Diazepam? Open

epi

UCL/TLOmodel#1372 · 2 assignees · Opened May 24, 2024
X-ray consumables in `RTI` module Open

epi

UCL/TLOmodel#1371 · 1 assignee · Opened May 24, 2024
Deprecate `HSI_CareOfWomenDuringPregnancy_FocusedANCVisit` Open

epi

UCL/TLOmodel#1370 · 1 assignee · Opened May 24, 2024
Missing medications as treatment for CMD module Open

epi

UCL/TLOmodel#1347 · 1 assignee · Opened May 15, 2024
First Task for ECSA Developers Open

potential project

UCL/TLOmodel#1319 · 2 comments · 1 assignee · Opened Apr 19, 2024
Move repositories under TLOmodel organization Open

enhancement framework

Difficulty 3/5 1-2 days Newbie friendliness 25/100

UCL/TLOmodel#1311 · Opened Apr 8, 2024
Remove deprecated concept of Consumables Packages Open

framework good-for-new-starter

UCL/TLOmodel#1303 · 1 comment · 1 reaction · 3 assignees · Opened Mar 26, 2024
MDR-TB should be linked with treatment failure Open

epi

UCL/TLOmodel#1259 · 1 comment · 1 assignee · Opened Jan 18, 2024
Effectiveness of neonatal resuscitation on term/preterm mortality Open

epi

UCL/TLOmodel#1254 · 1 assignee · Opened Jan 12, 2024

UCL/TLOmodel

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