Owner
Medical-Event-Data-Standard
11 indexed repositories · View on GitHub
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meds
Schema definitions and Python types for Medical Event Data Standard, a standard for medical event data such as EHR and claims data
Python · 134 stars
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meds_etl
A collection of ETLs from common data formats to Medical Event Data Standard
Python · 43 stars
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MEDS-DEV
The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health
Python · 43 stars
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MIMIC_IV_MEDS
The MIMIC-IV MEDS ETL
Python · 25 stars
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ETL_MEDS_Template
A template repository for a MEDS-Transforms powered extraction pipeline for a custom dataset.
Python · 7 stars
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eICU_MEDS
An eICU Extraction template for MEDS
Python · 7 stars
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MEDS_ML4H_2025_Tutorial
Files and resources for the MEDS ML4H 2025 Tutorial
Jupyter Notebook · 5 stars
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meds_testing_helpers
Testing, benchmarking, and synthetic data generation helpers for MEDS tools, pipelines, and models.
Python · 4 stars
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medical-event-data-standard.github.io
GitHub Pages site for MEDS
Jupyter Notebook · 4 stars
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flexible_schema
A simple metaclass mixin to enable specifying validatable schemas with optional columns or while allowing column re-ordering or extra col...
Python · 1 star
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meds_summary_stats
Fast, privacy-safe summary statistics over MEDS datasets, for validating and regression-testing MEDS ETLs.
Python · 1 star
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Subjects get one MEDS_BIRTH per unit stay, not per subject (27,413 subjects affected at full scale) Open
Difficulty 3/5 1-2 days Newbie friendliness 58/100
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extract_MEDS_summary_stats peak memory is linear in row count; OOMs at 116 GB on a 2.7B-row cohort Open
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Difficulty 1/5 Under an hour Newbie friendliness 88/100
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Difficulty 4/5 3-5 days Newbie friendliness 55/100
Medical-Event-Data-Standard/MIMIC_IV_MEDS#66 · 1 comment ·
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Difficulty 3/5 1-2 days Newbie friendliness 58/100
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Difficulty 3/5 1-2 days Newbie friendliness 68/100
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Difficulty 2/5 Half a day Newbie friendliness 76/100
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
Medical-Event-Data-Standard/MIMIC_IV_MEDS#65 · 3 comments ·
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Difficulty 2/5 1-3 hours Newbie friendliness 68/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
Medical-Event-Data-Standard/eICU_MEDS#9 · 3 comments ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 42/100
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
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Difficulty 2/5 1-3 hours Newbie friendliness 72/100
Medical-Event-Data-Standard/MEDS-DEV#315 · 1 comment ·
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enhancement Models
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Difficulty 3/5 1-2 days Newbie friendliness 64/100
Medical-Event-Data-Standard/eICU_MEDS#7 · 1 reaction ·
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enhancement Models
Difficulty 5/5 Over a week Newbie friendliness 35/100
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enhancement MEDS-Tab Models
Difficulty 4/5 3-5 days Newbie friendliness 45/100
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enhancement Models
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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enhancement priority:medium Usability/Interface Website / Branding
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Code Cleanliness/Tech Debt priority:medium Website / Branding
Difficulty 4/5 3-5 days Newbie friendliness 50/100
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priority:medium Testing Website / Branding
Difficulty 5/5 Over a week Newbie friendliness 45/100
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Code Cleanliness/Tech Debt priority:medium Results storage and tracking Website / Branding
Difficulty 5/5 Over a week Newbie friendliness 25/100
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Code Cleanliness/Tech Debt priority:medium Results Interpretation Website / Branding
Difficulty 5/5 Over a week Newbie friendliness 25/100
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documentation priority:medium Website / Branding
Difficulty 3/5 1-2 days Newbie friendliness 68/100
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priority:high Testing Website / Branding
Difficulty 4/5 3-5 days Newbie friendliness 68/100
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Code Cleanliness/Tech Debt priority:high Website / Branding
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Chore: migrate `onBrokenMarkdownLinks` to `siteConfig.markdown.hooks` (Docusaurus v4 deprecation) Open
Difficulty 1/5 1-3 hours Newbie friendliness 84/100
Medical-Event-Data-Standard/medical-event-data-standard.github.io#86 ·
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Difficulty 1/5 Under an hour Newbie friendliness 68/100
Medical-Event-Data-Standard/medical-event-data-standard.github.io#85 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 74/100
Medical-Event-Data-Standard/medical-event-data-standard.github.io#84 ·
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
Medical-Event-Data-Standard/medical-event-data-standard.github.io#83 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 68/100
Medical-Event-Data-Standard/medical-event-data-standard.github.io#82 ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
Medical-Event-Data-Standard/ETL_MEDS_Template#19 · 1 comment ·
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context7 Open
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Context7 Open
Difficulty 4/5 3-5 days Newbie friendliness 48/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Exploring a declarative clinical intent layer on top of MEDS (PSDL) — seeking community feedback Open
Difficulty 5/5 Over a week Newbie friendliness 25/100
Medical-Event-Data-Standard/meds#103 · 1 comment ·
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Difficulty 5/5 Over a week Newbie friendliness 30/100
Medical-Event-Data-Standard/meds#102 · 5 comments ·
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Difficulty 1/5 Under an hour Newbie friendliness 25/100
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Difficulty 3/5 1-2 days Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 2/5 1-3 hours Newbie friendliness 48/100
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Difficulty 3/5 1-2 days Newbie friendliness 25/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
Medical-Event-Data-Standard/MEDS-DEV#266 · 3 comments ·
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Datasets Tasks
Difficulty 4/5 3-5 days Newbie friendliness 30/100
Medical-Event-Data-Standard/MEDS-DEV#265 · 3 comments ·
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enhancement help wanted
Difficulty 3/5 1-2 days Newbie friendliness 45/100
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Difficulty 3/5 1-2 days Newbie friendliness 45/100
Medical-Event-Data-Standard/MEDS-DEV#263 · 1 comment ·
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Difficulty 1/5 Under an hour Newbie friendliness 68/100
Medical-Event-Data-Standard/MEDS-DEV#253 · 1 reaction ·
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