Medical-Event-Data-Standard / Medical-Event-Data-Standard/MEDS-DEV
OSError: [Errno 122] Disk quota exceeded
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- Dominant language
- Python
- Stars
- 43
- Forks
- 10
- PR merge metrics
- No merged PRs in 30d
Description
I believe my HPC is running into the file creation limit with the environment caching that it is doing with CEHRBERT. I have retried multiple times to run this on a large dataset (5.4M training subjects), but it always runs into this error, which is not an out-of-space error, but rather seems to hit a file creation quota.
Would there be a workaround for this?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the CEHRBERT environment-caching run on the 5.4M-subject dataset and inspect where file creation reaches the HPC quota. Compare the behavior with available storage limits and identify a documented workaround that completes the run without exceeding the file-creation limit.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- hpc, machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100